diff options
Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/rqtl2/phenotypes_qc.py | 7 |
1 files changed, 4 insertions, 3 deletions
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py index 72d6c83..084c876 100644 --- a/scripts/rqtl2/phenotypes_qc.py +++ b/scripts/rqtl2/phenotypes_qc.py @@ -198,7 +198,7 @@ def qc_phenocovar_file( "-", "-", (f"File {filepath.name} is missing the {heading} heading " - "in the header line."))),) + "in the header row/line."))),) def collect_errors(errors_and_linecount, line): _errs, _lc = errors_and_linecount @@ -312,8 +312,9 @@ def qc_pheno_file(# pylint: disable=[too-many-locals, too-many-arguments, too-ma "header row", "-", ", ".join(_absent), - ("The following phenotype names do not exist in any of the " - f"provided phenocovar files: ({', '.join(_absent)})"))),) + ("The following trait names/identifiers do not exist in any of " + "the provided descriptions/covariates files: " + f"({', '.join(_absent)})"))),) def collect_errors(errors_and_linecount, line): _errs, _lc = errors_and_linecount |