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Diffstat (limited to 'scripts')
| -rw-r--r-- | scripts/phenotypes_bulk_edit.py | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py index bbce60d..0b4fec5 100644 --- a/scripts/phenotypes_bulk_edit.py +++ b/scripts/phenotypes_bulk_edit.py @@ -148,6 +148,12 @@ def read_file(filepath: Path) -> Iterator[str]: ((None if item.strip() == "" else item.strip()) for item in fields))) _pheno, _xref = _dict.pop("UniqueIdentifier").split("::") + _dict = { + key: ((float(val) if bool(val) else val) + if key not in BULK_EDIT_COMMON_FIELDNAMES + else val) + for key, val in _dict.items() + } _dict["phenotype_id"] = int(_pheno.split(":")[1]) _dict["xref_id"] = int(_xref.split(":")[1]) if _dict["PubMed_ID"] is not None: |