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authorFrederick Muriuki Muriithi2025-04-14 16:10:49 -0500
committerFrederick Muriuki Muriithi2025-04-14 16:10:49 -0500
commit14aed51e4aab04c1c53549ee9f1ce5fc20d6b11e (patch)
treea493c4b9783ba4eb922c378de0533c9b48500e73 /scripts
parentfa3dd73aed2d238957cc449a9e3c7b1ee1d86352 (diff)
downloadgn-uploader-14aed51e4aab04c1c53549ee9f1ce5fc20d6b11e.tar.gz
Convert values to float where present.
Diffstat (limited to 'scripts')
-rw-r--r--scripts/phenotypes_bulk_edit.py6
1 files changed, 6 insertions, 0 deletions
diff --git a/scripts/phenotypes_bulk_edit.py b/scripts/phenotypes_bulk_edit.py
index bbce60d..0b4fec5 100644
--- a/scripts/phenotypes_bulk_edit.py
+++ b/scripts/phenotypes_bulk_edit.py
@@ -148,6 +148,12 @@ def read_file(filepath: Path) -> Iterator[str]:
((None if item.strip() == "" else item.strip())
for item in fields)))
_pheno, _xref = _dict.pop("UniqueIdentifier").split("::")
+ _dict = {
+ key: ((float(val) if bool(val) else val)
+ if key not in BULK_EDIT_COMMON_FIELDNAMES
+ else val)
+ for key, val in _dict.items()
+ }
_dict["phenotype_id"] = int(_pheno.split(":")[1])
_dict["xref_id"] = int(_xref.split(":")[1])
if _dict["PubMed_ID"] is not None: