aboutsummaryrefslogtreecommitdiff
path: root/scripts
diff options
context:
space:
mode:
Diffstat (limited to 'scripts')
-rw-r--r--scripts/load_phenotypes_to_db.py6
1 files changed, 3 insertions, 3 deletions
diff --git a/scripts/load_phenotypes_to_db.py b/scripts/load_phenotypes_to_db.py
index dc083cd..8f49e10 100644
--- a/scripts/load_phenotypes_to_db.py
+++ b/scripts/load_phenotypes_to_db.py
@@ -358,7 +358,7 @@ def load_data(conn: mysqldb.Connection, job: dict) -> int:
int(_job_metadata["dataset_id"]))
# 1. Just retrive the publication: Don't create publications for now.
_publication = fetch_publication_by_id(
- conn, int(_job_metadata.get("publicationid", "0"))) or {"Id": 0}
+ conn, int(_job_metadata.get("publication_id", "0"))) or {"Id": 0}
# 2. Save all new phenotypes:
# -> return phenotype IDs
bundle = Path(_job_metadata["bundle_file"])
@@ -491,7 +491,7 @@ if __name__ == "__main__":
db_results = load_data(conn, job)
- logger.debug("Unlocking all database tables.")
+ logger.info("Unlocking all database tables.")
cursor.execute("UNLOCK TABLES")
# Update authorisations (break this down) — maybe loop until it works?
@@ -504,7 +504,7 @@ if __name__ == "__main__":
try:
sys.exit(main())
- except:
+ except Exception as _exc:
logger.debug("Data loading failed… Halting!",
exc_info=True)
sys.exit(1)