diff options
Diffstat (limited to 'scripts/rqtl2/phenotypes_qc.py')
| -rw-r--r-- | scripts/rqtl2/phenotypes_qc.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/scripts/rqtl2/phenotypes_qc.py b/scripts/rqtl2/phenotypes_qc.py index 699c291..5c89ca0 100644 --- a/scripts/rqtl2/phenotypes_qc.py +++ b/scripts/rqtl2/phenotypes_qc.py @@ -209,12 +209,12 @@ def qc_phenocovar_file( (f"Record {_lc} in file {filepath.name} has a different " "number of columns than the number of headings"))),) _line = dict(zip(_headings, line)) - if not bool(_line["description"]): + if not bool(_line.get("description")): _errs = _errs + ( save_error(InvalidValue(filepath.name, _line[_headings[0]], "description", - _line["description"], + _line.get("description"), "The description is not provided!")),) rconn.hset(file_fqkey(fqkey, "metadata", filepath), |