diff options
| -rw-r--r-- | scripts/run_qtlreaper.py | 5 |
1 files changed, 5 insertions, 0 deletions
diff --git a/scripts/run_qtlreaper.py b/scripts/run_qtlreaper.py index d9cadea..ab19da0 100644 --- a/scripts/run_qtlreaper.py +++ b/scripts/run_qtlreaper.py @@ -174,6 +174,11 @@ def dispatch(args: Namespace) -> int: # short-circuits to delete file if exists _traitsfile.exists() and _traitsfile.unlink() _qtlreaper_main_output.exists() and _qtlreaper_main_output.unlink() + + if _qtlreaper.returncode != 0: + return _qtlreaper.returncode + + save_qtl_values_to_db(conn, results) logger.info("Successfully computed p values for %s traits.", len(_traitsdata)) return 0 except FileNotFoundError as fnf: |