diff options
| -rw-r--r-- | .gitignore | 4 | ||||
| -rw-r--r-- | README.org | 20 | ||||
| -rw-r--r-- | manifest.scm | 6 | ||||
| -rw-r--r-- | tests/qc/qc/test_cells.py | 25 | ||||
| -rw-r--r-- | tests/strategies.py | 8 |
5 files changed, 62 insertions, 1 deletions
@@ -1 +1,3 @@ -/**/*~
\ No newline at end of file +/**/*~ +/**/*.pyc +/.hypothesis
\ No newline at end of file @@ -24,3 +24,23 @@ following criteria: - - there must be a number to the left side of the dot (e.g. 0.55555 is allowed but .55555 is not). - check line endings to make sure they are Unix and not DOS - check strain headers against a source of truth (see strains.csv) + +** Development + +For reproducibility, this project is developed using guix. + +To launch a guix shell for development, do: + +#+BEGIN_SRC shell + guix shell --container --network --manifest=manifest.scm +#+END_SRC + +to get an environment that is isolated from the rest of your system. + +*** Tests + +Run tests with: + +#+BEGIN_SRC shell + pytest +#+END_SRC diff --git a/manifest.scm b/manifest.scm new file mode 100644 index 0000000..c41be35 --- /dev/null +++ b/manifest.scm @@ -0,0 +1,6 @@ +(specifications->manifest + (list "python" + "python-mypy" + "python-pylint" + "python-pytest" + "python-hypothesis")) diff --git a/tests/qc/qc/test_cells.py b/tests/qc/qc/test_cells.py new file mode 100644 index 0000000..8f1e9ea --- /dev/null +++ b/tests/qc/qc/test_cells.py @@ -0,0 +1,25 @@ +"""Test that values in cells within a line fulfill the required criteria""" + +from hypothesis import given +from hypothesis import strategies as st + +@given(num_str=st.from_regex("^(?!([0-9]+\.([0-9]{3}|[0-9]{6,}))).*", fullmatch=True)) +def test_cell_value_errors_with_invalid_inputs(num_str): + print(f"NUMBER STRING: {num_str}") + assert False, "Not implemented" + +@given(num_str=st.from_regex("[0-9]+\.([0-9]{1,2}|[0-9]{4,})", fullmatch=True)) +def test_cell_average_value_errors_if_not_three_decimal_places(num_str): + assert False, "Not implemented" + +@given(num_str=st.from_regex("[0-9]+\.[0-9]{3}", fullmatch=True)) +def test_cell_average_value_pass_if_three_decimal_places(num_str): + assert False, "Not implemented" + +@given(num_str=st.from_regex("[0-9]+\.([0-9]{0,5})", fullmatch=True)) +def test_cell_standard_error_value_errors_if_less_than_six_decimal_places(num_str): + assert False, "Not implemented" + +@given(num_str=st.from_regex("[0-9]+\.[0-9]{6,}", fullmatch=True)) +def test_cell_standard_error_value_pass_if_six_or_more_decimal_places(num_str): + assert False, "Not implemented" diff --git a/tests/strategies.py b/tests/strategies.py new file mode 100644 index 0000000..ccda362 --- /dev/null +++ b/tests/strategies.py @@ -0,0 +1,8 @@ +"""Module holding custom data generation strategies""" + +from hypothesis.strategies import characters, composite + +@composite +def average_numbers_string(draw): + num = draw(floats(allow_nan=False, allow_infinity=False,)) + return f"{num:.3f}" |