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-rw-r--r--README.org7
-rw-r--r--quality_control/standard_error.py2
2 files changed, 5 insertions, 4 deletions
diff --git a/README.org b/README.org
index 55e70df..818f9d5 100644
--- a/README.org
+++ b/README.org
@@ -19,9 +19,10 @@ following criteria:
- No empty data cells
- no data cells with spurious characters like `eeeee`, `5.555iloveguix`, etc.
- decimal numbers must conform to the following criteria:
-- - when checking an average file decimal numbers must contain exactly three places to the right side of the dot.
-- - when checking a standard error file decimal numbers must contain six or greater places to the right side of the dot.
-- - there must be a number to the left side of the dot (e.g. 0.55555 is allowed but .55555 is not).
+ - when checking an average file decimal numbers must contain exactly three places to the right side of the dot.
+ - when checking a standard error file decimal numbers must contain six or greater places to the right side of the dot.
+ - there must be a number to the left side of the dot (e.g. 0.55555 is allowed but .55555 is not).
+ - when checking the standard error file, also accept exponential notation with at least 6 decimal places e.g. 0.3423452E-13
- check line endings to make sure they are Unix and not DOS
- check strain headers against a source of truth (see strains.csv)
diff --git a/quality_control/standard_error.py b/quality_control/standard_error.py
index c866993..5489ade 100644
--- a/quality_control/standard_error.py
+++ b/quality_control/standard_error.py
@@ -12,7 +12,7 @@ def invalid_value(
`val` is not a valid input for standard error files, otherwise, it returns
`None`.
"""
- if re.search(r"^[0-9]+\.[0-9]{6,}$", val):
+ if re.search(r"(^[0-9]+\.[0-9]{6,}$|^[0-9]+\.[0-9]{6,}[eE]-[0-9]+$)", val):
return None
return InvalidValue(
line_number, column_number, val, (