diff options
| -rw-r--r-- | scripts/run_qtlreaper.py | 6 |
1 files changed, 5 insertions, 1 deletions
diff --git a/scripts/run_qtlreaper.py b/scripts/run_qtlreaper.py index 54e5d45..a0c3b22 100644 --- a/scripts/run_qtlreaper.py +++ b/scripts/run_qtlreaper.py @@ -1,4 +1,5 @@ """Script to run rust-qtlreaper and update database with results.""" +import os import sys import csv import time @@ -152,7 +153,10 @@ def dispatch(args: Namespace) -> int: "--n_permutations", "1000", "--geno", _genofile, "--traits", _traitsfile, - "--main_output", _qtlreaper_main_output)) as _qtlreaper: + "--main_output", _qtlreaper_main_output), + env=({**os.environ, "RUST_BACKTRACE": "full"} + if logger.getEffectiveLevel() == logging.DEBUG + else dict(os.environ))) as _qtlreaper: while _qtlreaper.poll() is None: logger.debug("QTLReaper process running…") time.sleep(1) |