diff options
| -rw-r--r-- | uploader/phenotypes/views.py | 44 |
1 files changed, 27 insertions, 17 deletions
diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 312179e..ddf6908 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -1,6 +1,7 @@ """Views handling ('classical') phenotypes.""" from functools import wraps +from requests.models import Response from MySQLdb.cursors import DictCursor from flask import (flash, request, @@ -197,6 +198,31 @@ def view_phenotype(# pylint: disable=[unused-argument] **kwargs ): """View an individual phenotype from the dataset.""" + def __render__(privileges): + return render_template( + "phenotypes/view-phenotype.html", + species=species, + population=population, + dataset=dataset, + phenotype=phenotype_by_id(conn, + species["SpeciesId"], + population["Id"], + dataset["Id"], + xref_id), + privileges=(privileges + ### For demo! Do not commit this part + + ("group:resource:edit-resource", + "group:resource:delete-resource",) + ### END: For demo! Do not commit this part + ), + activelink="view-phenotype") + + def __fail__(error): + if isinstance(error, Response) and error.json() == "No linked resource!": + return __render__(tuple()) + return make_either_error_handler( + "There was an error fetching the roles and privileges.")(error) + with database_connection(app.config["SQL_URI"]) as conn: return oauth2_post( "/auth/resource/phenotypes/individual/linked-resource", @@ -210,23 +236,7 @@ def view_phenotype(# pylint: disable=[unused-argument] lambda resource: tuple( privilege["privilege_id"] for role in resource["roles"] for privilege in role["privileges"]) - ).then( - lambda privileges: render_template( - "phenotypes/view-phenotype.html", - species=species, - population=population, - dataset=dataset, - phenotype=phenotype_by_id(conn, - species["SpeciesId"], - population["Id"], - dataset["Id"], - xref_id), - privileges=privileges, - activelink="view-phenotype") - ).either( - make_either_error_handler( - "There was an error fetching the roles and privileges."), - lambda resp: resp) + ).then(__render__).either(__fail__, lambda resp: resp) @phenotypesbp.route( |