diff options
| -rw-r--r-- | uploader/phenotypes/views.py | 27 | ||||
| -rw-r--r-- | uploader/templates/phenotypes/job-status.html | 69 |
2 files changed, 96 insertions, 0 deletions
diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py index 79aab81..f23b377 100644 --- a/uploader/phenotypes/views.py +++ b/uploader/phenotypes/views.py @@ -366,3 +366,30 @@ def add_phenotypes(species: dict, population: dict, dataset: dict, **kwargs):# p # f"{app.config['UPLOAD_FOLDER']}/job_errors") raise NotImplementedError("Please implement this...") + + +@phenotypesbp.route( + "<int:species_id>/populations/<int:population_id>/phenotypes/datasets" + "/<int:dataset_id>/job/<uuid:job_id>", + methods=["GET"]) +@require_login +@with_dataset( + species_redirect_uri="species.populations.phenotypes.index", + population_redirect_uri="species.populations.phenotypes.select_population", + redirect_uri="species.populations.phenotypes.list_datasets") +def job_status(species: dict, population: dict, dataset: dict, job_id: uuid, **kwargs): + """Retrieve current status of a particular phenotype QC job.""" + from uploader.debug import __pk__ + + with Redis.from_url(app.config["REDIS_URL"], decode_responses=True) as rconn: + try: + job = jobs.job(rconn, jobs.jobsnamespace(), str(job_id)) + except jobs.JobNotFound as _jnf: + job = None + return render_template("phenotypes/job-status.html", + species=species, + population=population, + dataset=dataset, + job_id=job_id, + job=job, + activelink="add-phenotypes") diff --git a/uploader/templates/phenotypes/job-status.html b/uploader/templates/phenotypes/job-status.html new file mode 100644 index 0000000..d531a71 --- /dev/null +++ b/uploader/templates/phenotypes/job-status.html @@ -0,0 +1,69 @@ +{%extends "phenotypes/base.html"%} +{%from "cli-output.html" import cli_output%} +{%from "flash_messages.html" import flash_all_messages%} +{%from "macro-table-pagination.html" import table_pagination%} +{%from "phenotypes/macro-display-pheno-dataset-card.html" import display_pheno_dataset_card%} + +{%block extrameta%} +{%if job and job.status not in ("success", "completed:success", "error", "completed:error")%} +<meta http-equiv="refresh" content="5" /> +{%endif%} +{%endblock%} + +{%block title%}Phenotypes{%endblock%} + +{%block pagetitle%}Phenotypes{%endblock%} + +{%block lvl4_breadcrumbs%} +<li {%if activelink=="add-phenotypes"%} + class="breadcrumb-item active" + {%else%} + class="breadcrumb-item" + {%endif%}> + <a href="{{url_for('species.populations.phenotypes.add_phenotypes', + species_id=species.SpeciesId, + population_id=population.Id, + dataset_id=dataset.Id)}}">View Datasets</a> +</li> +{%endblock%} + +{%block contents%} + +{%if job%} +<div class="row"> + <p><strong>Status:</strong> {{job.status}}</p> + {%if job.status in ("completed:success", "success")%} + <p><a href="#" + class="not-implemented btn btn-primary" + title="Continue to process data">Continue</a> + </p> + {%endif%} +</div> + +<div class="row"> + {{cli_output(job, "stdout")}} +</div> + +<div class="row"> + {{cli_output(job, "stderr")}} +</div> +{%else%} +<div class="row"> + <h3 class="text-danger">No Such Job</h3> + <p>Could not find a job with the ID: {{job_id}}</p> + <p> + Please go back to + <a href="{{url_for('species.populations.phenotypes.view_dataset', + species_id=species.SpeciesId, + population_id=population.Id, + dataset_id=dataset.Id)}}" + title="'{{dataset.Name}}' dataset page"> + the '{{dataset.Name}}' dataset page</a> + to upload new phenotypes or edit existing ones.</p> +</div> +{%endif%} +{%endblock%} + +{%block sidebarcontents%} +{{display_pheno_dataset_card(species, population, dataset)}} +{%endblock%} |