Initialise the phenotypes section.

2 files changed, 27 insertions, 0 deletions

diff --git a/uploader/phenotypes/__init__.py b/uploader/phenotypes/__init__.py
new file mode 100644
index 0000000..c17d32c
--- /dev/null
+++ b/uploader/phenotypes/__init__.py
@@ -0,0 +1,2 @@
+"""Package for handling ('classical') phenotype data"""
+from .views import phenotypesbp
diff --git a/uploader/phenotypes/views.py b/uploader/phenotypes/views.py
new file mode 100644
index 0000000..862a224
--- /dev/null
+++ b/uploader/phenotypes/views.py
@@ -0,0 +1,25 @@
+"""Views handling ('classical') phenotypes."""
+from flask import request, Blueprint, render_template, current_app as app
+
+from uploader.datautils import order_by_family
+from uploader.authorisation import require_login
+from uploader.db_utils import database_connection
+from uploader.species.models import all_species, species_by_id
+
+phenotypesbp = Blueprint("phenotypes", __name__)
+
+@phenotypesbp.route("/phenotypes", methods=["GET"])
+@require_login
+def index():
+    """Direct entry-point for phenotypes data handling."""
+    with database_connection(app.config["SQL_URI"]) as conn:
+        if not bool(request.args.get("species_id")):
+            return render_template("phenotypes/index.html",
+                                   species=order_by_family(all_species(conn)),
+                                   activelink="phenotypes")
+
+        species = species_by_id(conn, request.args.get("species_id"))
+        if not bool(species):
+            flash("No such species!", "alert-danger")
+            return redirect(url_for("species.populations.phenotypes.index"))
+        return "Would lead you to go select population…"