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| author | Frederick Muriuki Muriithi | 2025-04-14 14:04:31 -0500 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2025-04-14 14:04:31 -0500 |
| commit | b9490c4e26d97c1a569edbe99929bcf962d9df3b (patch) | |
| tree | 306e7851ce4ad29eceb540491603ca5f046270c9 /tests/uploader/phenotypes | |
| parent | c58105c64920625b5e01d820169c884dc136d260 (diff) | |
| download | gn-uploader-b9490c4e26d97c1a569edbe99929bcf962d9df3b.tar.gz | |
Move test to appropriate package.
Diffstat (limited to 'tests/uploader/phenotypes')
| -rw-r--r-- | tests/uploader/phenotypes/test_misc.py | 67 |
1 files changed, 0 insertions, 67 deletions
diff --git a/tests/uploader/phenotypes/test_misc.py b/tests/uploader/phenotypes/test_misc.py deleted file mode 100644 index 7a52941..0000000 --- a/tests/uploader/phenotypes/test_misc.py +++ /dev/null @@ -1,67 +0,0 @@ -"""Tests for functions used for bulk editing.""" -import pytest - -from uploader.publications.misc import publications_differences - - -@pytest.mark.unit_test -@pytest.mark.parametrize( - "filedata,dbdata,pubmed2pubidmap,expected", - (((), (), {}, tuple()), # no data - - # Same Data - (({"phenotype_id": 1, "xref_id": 10001, "PubMed_ID": 9999999999999}, - {"phenotype_id": 1, "xref_id": 10002, "PubMed_ID": 9999999999999}, - {"phenotype_id": 1, "xref_id": 10003, "PubMed_ID": 9999999999999}, - {"phenotype_id": 1, "xref_id": 10005, "PubMed_ID": 9999999999999}), - ({"PhenotypeId": 1, "xref_id": 10001, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10002, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10003, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10004, "PublicationId": 15, - "PubMed_ID": 9999999999999}), - {9999999999999: 15}, - tuple()), - - # Differences: no new pubmeds (all pubmeds in db) - (({"phenotype_id": 1, "xref_id": 10001, "PubMed_ID": 9999999999999}, - {"phenotype_id": 1, "xref_id": 10002, "PubMed_ID": 9999999999998}, - {"phenotype_id": 1, "xref_id": 10003, "PubMed_ID": 9999999999999}, - {"phenotype_id": 1, "xref_id": 10004, "PubMed_ID": 9999999999997}), - ({"PhenotypeId": 1, "xref_id": 10001, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10002, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10003, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10004, "PublicationId": 15, - "PubMed_ID": None}), - {9999999999999: 15, 9999999999998: 18, 9999999999997: 12}, - ({"PhenotypeId": 1, "xref_id": 10002, "PublicationId": 18, - "PubMed_ID": 9999999999998}, - {"PhenotypeId": 1, "xref_id": 10004, "PublicationId": 12, - "PubMed_ID": 9999999999997})), - - # Differences: Deletions of pubmeds - (({"phenotype_id": 1, "xref_id": 10001, "PubMed_ID": 9999999999999}, - {"phenotype_id": 1, "xref_id": 10002, "PubMed_ID": None}, - {"phenotype_id": 1, "xref_id": 10003, "PubMed_ID": 9999999999999}, - {"phenotype_id": 1, "xref_id": 10004, "PubMed_ID": None}), - ({"PhenotypeId": 1, "xref_id": 10001, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10002, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10003, "PublicationId": 15, - "PubMed_ID": 9999999999999}, - {"PhenotypeId": 1, "xref_id": 10004, "PublicationId": 15, - "PubMed_ID": 9999999999999}), - {9999999999999: 15, 9999999999998: 18, 9999999999997: 12}, - ({"PhenotypeId": 1, "xref_id": 10002, "PublicationId": None, - "PubMed_ID": None}, - {"PhenotypeId": 1, "xref_id": 10004, "PublicationId": None, - "PubMed_ID": None})))) -def test_publications_differences(filedata, dbdata, pubmed2pubidmap, expected): - assert publications_differences( - filedata, dbdata, pubmed2pubidmap) == expected |