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| author | Frederick Muriuki Muriithi | 2024-02-05 12:11:43 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-02-05 12:11:43 +0300 |
| commit | 949ea71eb721a3f5bdff3ba10f7dd7c70899d560 (patch) | |
| tree | 5ea0674953489ce83ffa11c2b689d3c8e31ebede /scripts/rqtl2/install_genotypes.py | |
| parent | ab71b34b97f3f1eee52b5688f41644541535f281 (diff) | |
| download | gn-uploader-949ea71eb721a3f5bdff3ba10f7dd7c70899d560.tar.gz | |
Fix linting and type errors.
Diffstat (limited to 'scripts/rqtl2/install_genotypes.py')
| -rw-r--r-- | scripts/rqtl2/install_genotypes.py | 3 |
1 files changed, 2 insertions, 1 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py index bfe17b8..7f3f65a 100644 --- a/scripts/rqtl2/install_genotypes.py +++ b/scripts/rqtl2/install_genotypes.py @@ -11,6 +11,7 @@ import MySQLdb as mdb from MySQLdb.cursors import DictCursor from r_qtl import r_qtl2 as rqtl2 +from r_qtl import r_qtl2_qc as rqc from functional_tools import take @@ -166,7 +167,7 @@ def install_genotypes(#pylint: disable=[too-many-arguments, too-many-locals] with ZipFile(str(rqtl2bundle.absolute()), "r") as zfile: try: logger.info("Validating bundle") - rqtl2.validate_bundle(zfile) + rqc.validate_bundle(zfile) logger.info("Bundle validated successfully.") logger.info(("Loading genotypes. This could take a while. " "Please be patient.")) |