aboutsummaryrefslogtreecommitdiff
path: root/qc_app/templates/data_review.html
diff options
context:
space:
mode:
authorFrederick Muriuki Muriithi2024-07-25 11:07:33 -0500
committerFrederick Muriuki Muriithi2024-07-25 14:34:09 -0500
commit754e8f214b940e05298cb360ed829f5c685d55a5 (patch)
tree62c2c5b601746621f0949b38937ad232f006dee2 /qc_app/templates/data_review.html
parentde9e1b9fe37928b864bea28b408de6c14d04526b (diff)
downloadgn-uploader-754e8f214b940e05298cb360ed829f5c685d55a5.tar.gz
Rename module: qc_app --> uploader
Diffstat (limited to 'qc_app/templates/data_review.html')
-rw-r--r--qc_app/templates/data_review.html85
1 files changed, 0 insertions, 85 deletions
diff --git a/qc_app/templates/data_review.html b/qc_app/templates/data_review.html
deleted file mode 100644
index b7528fd..0000000
--- a/qc_app/templates/data_review.html
+++ /dev/null
@@ -1,85 +0,0 @@
-{%extends "base.html"%}
-
-{%block title%}Data Review{%endblock%}
-
-{%block contents%}
-<h1 class="heading">data review</h1>
-
-<div class="row">
- <h2 id="data-concerns">Data Concerns</h2>
- <p>The following are some of the requirements that the data in your file
- <strong>MUST</strong> fulfil before it is considered valid for this system:
- </p>
-
- <ol>
- <li>File headings
- <ul>
- <li>The first row in the file should contains the headings. The number of
- headings in this first row determines the number of columns expected for
- all other lines in the file.</li>
- <li>Each heading value in the first row MUST appear in the first row
- <strong>ONE AND ONLY ONE</strong> time</li>
- <li>The sample/cases (previously 'strains') headers in your first row will be
- against those in the <a href="https://genenetwork.org"
- title="Link to the GeneNetwork service">
- GeneNetwork</a> database.<br />
- <small class="text-muted">
- If you encounter an error saying your sample(s)/case(s) do not exist
- in the GeneNetwork database, then you will have to use the
- <a href="{{url_for('samples.select_species')}}"
- title="Upload samples/cases feature">Upload Samples/Cases</a>
- option on this system to upload them.
- </small>
- </ul>
- </li>
-
- <li>Data
- <ol>
- <li><strong>NONE</strong> of the data cells/fields is allowed to be empty.
- All fields/cells <strong>MUST</strong> contain a value.</li>
- <li>The first column of the data rows will be considered a textual field,
- holding the "identifier" for that row<li>
- <li>Except for the first column/field for each data row,
- <strong>NONE</strong> of the data columns/cells/fields should contain
- spurious characters like `eeeee`, `5.555iloveguix`, etc...<br />
- All of them should be decimal values</li>
- <li>decimal numbers must conform to the following criteria:
- <ul>
- <li>when checking an average file decimal numbers must have exactly three
- decimal places to the right of the decimal point.</li>
- <li>when checking a standard error file decimal numbers must have six or
- greater decimal places to the right of the decimal point.</li>
- <li>there must be a number to the left side of the decimal place
- (e.g. 0.55555 is allowed but .55555 is not).</li>
- </ul>
- </li>
- </ol>
- </li>
- </ol>
-</div>
-
-
-<div class="row">
- <h2 id="file-types">Supported File Types</h2>
- We support the following file types:
-
- <ul>
- <li>Tab-Separated value files (.tsv)
- <ul>
- <li>The <strong>TAB</strong> character is used to separate the fields of each
- column</li>
- <li>The values of each field <strong>ARE NOT</strong> quoted.</li>
- <li>Here is an
- <a href="https://gitlab.com/fredmanglis/gnqc_py/-/blob/main/tests/test_data/no_data_errors.tsv">
- example file</a> with a single data row.</li>
- </ul>
- </li>
- <li>.txt files: Content has the same format as .tsv file above</li>
- <li>.zip files: each zip file should contain
- <strong>ONE AND ONLY ONE</strong> file of the .tsv or .txt type above.
- <br />Any zip file with more than one file is invalid, and so is an empty
- zip file.</li>
- </ul>
-
-</div>
-{%endblock%}