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| author | Frederick Muriuki Muriithi | 2024-01-11 02:01:31 +0300 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-01-11 02:01:31 +0300 |
| commit | 242491b97183203a77b5b8634f6e8825c8b101fa (patch) | |
| tree | 2d0eb489e534b2721e8939ec99f87dd626883a30 | |
| parent | a4313e2cc0f8548946186838a4ce67e358e46bbe (diff) | |
| download | gn-uploader-242491b97183203a77b5b8634f6e8825c8b101fa.tar.gz | |
CLI: Require datasetid as an argument.
| -rw-r--r-- | scripts/rqtl2/install_genotypes.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/scripts/rqtl2/install_genotypes.py b/scripts/rqtl2/install_genotypes.py index 6ae3788..3b9e987 100644 --- a/scripts/rqtl2/install_genotypes.py +++ b/scripts/rqtl2/install_genotypes.py @@ -121,6 +121,7 @@ def cross_reference_genotypes(dbconn: mdb.Connection, def install_genotypes(dbconn: mdb.Connection, speciesid: int, populationid: int, + datasetid: int, rqtl2bundle: Path) -> int: """Load any existing genotypes into the database.""" count = 0 @@ -190,6 +191,8 @@ if __name__ == "__main__": help="Species to which bundle relates.") parser.add_argument("populationid", help="Population to group data under") + parser.add_argument("datasetid", + help="The dataset to which the data belongs.") parser.add_argument("rqtl2bundle", help="Path to R/qtl2 bundle zip file.", type=Path) @@ -226,6 +229,7 @@ if __name__ == "__main__": return install_genotypes(dbconn, args.speciesid, args.populationid, + args.datasetid, args.rqtl2bundle) sys.exit(main()) |