Process the untransposed files.

1 files changed, 15 insertions, 2 deletions

diff --git a/scripts/genotypes/preprocess_csv_collect_info.py b/scripts/genotypes/preprocess_csv_collect_info.py
index c74e8fa..771c11d 100644
--- a/scripts/genotypes/preprocess_csv_collect_info.py
+++ b/scripts/genotypes/preprocess_csv_collect_info.py
@@ -56,9 +56,22 @@ def process_transposed(line: tuple[str, ...]) -> LineDetails:
     raise NotImplementedError("Please implement this!")
 
 
-def process_untransposed(line: tuple[str, ...]) -> LineDetails:
+def process_untransposed(
+        line: tuple[str, ...],
+        settings: dict,
+        headers: tuple[str, ...]
+) -> LineDetails:
     """Processed line in a non-transposed file."""
-    raise NotImplementedError("Please implement this!")
+    _symbols = tuple(_symb for _head, _symb in zip(headers, line)
+                if _head not in (
+                        settings["markers"],
+                        settings["chromosome"],
+                        settings["cm"],
+                        settings["mb"]))
+    return LineDetails(
+        line_content=line,
+        line_header=line[0],
+        geno_symbols=tuple(set(_symbols)))
 
 
 def file_statistics(lines: Iterator[str], fileconfigs: dict) -> FileStats: