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BranchCommit messageAuthorAge
keyringAdd fredmanglis' key to the keyringFrederick Muriuki Muriithi19 months
load-raw-data-no-parsingFix bug: fetch from cursor, not return from cursor.execute(…)Frederick Muriuki Muriithi17 months
mainDeactivate linter error check.Frederick Muriuki Muriithi3 weeks
rework-species-selectionAdd missing scripts.Frederick Muriuki Muriithi5 months
rewrite-rqtl2-qcSave errors for each file in lists. Parallelise error checking.Frederick Muriuki Muriithi11 months
test-resumablejsDisplay error better.Frederick Muriuki Muriithi13 months
update-templates-for-bootstrapFix tests and issues caught by tests.Frederick Muriuki Muriithi14 months
 
 
AgeCommit messageAuthor
2024-08-21Save errors for each file in lists. Parallelise error checking.•••* Save the errors for each file in a redis list for that file. * Make error checking parallel, i.e. ensure every file of a particular type is checked completely independent of other files of the same type. rewrite-rqtl2-qcFrederick Muriuki Muriithi
2024-08-16Rewrite the QC code for R/qtl2Frederick Muriuki Muriithi
2024-08-16Ignore comment lines.Frederick Muriuki Muriithi
2024-08-16Log out correct parameters.Frederick Muriuki Muriithi
2024-08-13Bug: cross reference with NULL cM when "gmap" file is absent•••The "gmap" file might not exist in some bundles. In those instances, cross-reference the data without including the genotypes' physical positions (cM). Frederick Muriuki Muriithi
2024-08-12Bug: Ensure file type values are lists.Frederick Muriuki Muriithi
2024-08-12Update check for missing files: Check from directory.•••Enable the check for missing files to act upon a directory where the R/qtl2 bundle has been extracted into. Frederick Muriuki Muriithi
2024-08-12Add utility to transpose CSVs, renaming the original file.Frederick Muriuki Muriithi
2024-08-12Define new InvalidValue error type.•••Redesign the InvalidValue error type for the R/qtl2 bundles to list the errors according to the row and column titles rather than line numbers. This makes the error-reporting independent on whether or not the file is transposed. This will replace the use of the older `quality_control.errors.InvalidValue` error type that depends on the line and column numbers, and thus cannot work with transposable files. Frederick Muriuki Muriithi
2024-08-12Rename module: Module contains exceptions classes.Frederick Muriuki Muriithi
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