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Data transformers for GeneNetwork (particularly to RDF)
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2024-02-14
Capitalize the first string of every path.
Munyoki Kilyungi
2024-02-13
Convert extra dataset metadata to text-files.
Munyoki Kilyungi
2024-02-13
Remove more fields from dataset's RDF output.
Munyoki Kilyungi
2024-02-13
Fix missplaced parens.
Munyoki Kilyungi
2024-02-09
Re-add triplets that describe dataset terms.
Munyoki Kilyungi
2024-02-09
Update push and reset git commands.
Munyoki Kilyungi
2024-02-09
Use correct path to the datasets directory.
Munyoki Kilyungi
2024-02-08
Delete rdf triplets from dataset transform.
Munyoki Kilyungi
2024-02-08
Add method for commiting changes to the gn-docs git repo.
Munyoki Kilyungi
2024-02-08
Delete unused variable in the getopts arglist.
Munyoki Kilyungi
2024-02-08
Fix typo.
Munyoki Kilyungi
2024-02-08
Fix how the dataset directory is constructed.
Munyoki Kilyungi
2024-02-08
Remove "string->identifier" for the dataset directory name.
Munyoki Kilyungi
2024-02-08
Use correct format string literal when printing out sql results.
Munyoki Kilyungi
2024-02-08
Update local git-repo directory.
Munyoki Kilyungi
2024-02-08
Add a basic guile script to transform stored rtf data to files.
Munyoki Kilyungi
2024-01-08
Add InfoFiles.Experiment_Type metadata.
Munyoki Kilyungi
2024-01-05
Correct formatting for the gnt:location predicate for ProbeSets.
Munyoki Kilyungi
2023-12-22
Fix typo with pantherLink ResourceLink.
Munyoki Kilyungi
2023-12-22
Use correct property for classifying pantherLink as a resource.
Munyoki Kilyungi
2023-12-22
Delete duplicate entries for gnc:biogpsLink/gnc:gtexLink.
Munyoki Kilyungi
2023-12-22
Update handling of RGD_ID field in genelist metadata transform.
Munyoki Kilyungi
2023-12-22
Replace gnt:symbol with gnt:geneSymbol.
Munyoki Kilyungi
2023-12-22
Refactor gene metadata RDF transform.
Munyoki Kilyungi
2023-12-22
Replace gnc:GeneSymbol with gnc:Gene.
Munyoki Kilyungi
2023-12-22
Delete "GROUP BY" when transforming genelist/genelist_rn33 metadata.
Munyoki Kilyungi
2023-12-22
Use gnt:geneSymbol instead of rdfs:label/gnt:symbol.
Munyoki Kilyungi
2023-12-22
Use gnt:hasGeneId instead of gnt:gene/dct:references.
Munyoki Kilyungi
2023-12-22
Move gnt:hasGeneId definitions to genelist.scm
Munyoki Kilyungi
2023-12-15
Preserve gene symbol case when used as an identifer.
Munyoki Kilyungi
2023-12-15
Use URI encoding for OMIM and homologene resource link handling.
Munyoki Kilyungi
2023-12-15
Refactor Uniprot and GeneId handling in ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-15
Add missing "gene:" prefix in ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-15
Trim gene symbol rdfs:label for the GeneList_rn33 table.
Munyoki Kilyungi
2023-12-15
Use URI encoding for symbol-based resource link URLs.
Munyoki Kilyungi
2023-12-14
Remove "remap-species-identifiers" from generif transform.
Munyoki Kilyungi
2023-12-14
Link extra resources to genes and trim gene symbols.
Munyoki Kilyungi
2023-12-14
Refactor symbol identifier in strains.scm.
Munyoki Kilyungi
2023-12-14
Add GeneList metadata RDF transform.
Munyoki Kilyungi
2023-12-14
Remove some resource links from ProbeSet RDF transform.
Munyoki Kilyungi
2023-12-14
Use correct identifier for the AvgMethod table.
Munyoki Kilyungi
2023-12-04
Replace xkos:classifiedUnder -> gnt:belongsToGroup.
Munyoki Kilyungi
2023-12-04
Replace xkos:classifiedUnder -> gnt:belongsToSpecies for species.
Munyoki Kilyungi
2023-12-04
Replace xkos:classifiendUnder with gnt:belongsToGroup for groups.
Munyoki Kilyungi
2023-12-04
Fix typo in publishfreeze transform.
Munyoki Kilyungi
2023-11-30
Trim the contributor's name when transforming phenotype metadata.
Munyoki Kilyungi
2023-11-30
Add a label to the "gnt:lodScore" term.
Munyoki Kilyungi
2023-11-30
Set a phenotype's gnt:locus to a genotype.
Munyoki Kilyungi
2023-11-30
Replace LRS with LOD Score.
Munyoki Kilyungi
2023-11-24
Move remap-species-identifier to strings.scm.
Munyoki Kilyungi
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