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| author | Munyoki Kilyungi | 2023-11-30 16:07:44 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-11-30 16:07:44 +0300 |
| commit | abe23c624c6604026bb7140909e2ce0c919d3f52 (patch) | |
| tree | f063391ed9c658368b6d790ed4ff6856e8aa6251 /examples | |
| parent | a850acb21152106a5c9351ee414c5f745998766e (diff) | |
| download | gn-transform-databases-abe23c624c6604026bb7140909e2ce0c919d3f52.tar.gz | |
Set a phenotype's gnt:locus to a genotype.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
Diffstat (limited to 'examples')
| -rwxr-xr-x | examples/phenotype.scm | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/examples/phenotype.scm b/examples/phenotype.scm index 8263ca9..91cc624 100755 --- a/examples/phenotype.scm +++ b/examples/phenotype.scm @@ -82,7 +82,15 @@ #\,)) (set gnt:mean (annotate-field (field ("IFNULL(PublishXRef.mean, '')" mean)) '^^xsd:double)) - (set gnt:locus (field PublishXRef Locus)) + (set gnt:locus + (string->identifier + "" + (regexp-substitute/global + #f "[^A-Za-z0-9:]" + (sanitize-rdf-string (field PublishXRef Locus)) + 'pre "_" 'post) + #:separator "" + #:proc string-capitalize-first)) (set gnt:lodScore (annotate-field (field ("IFNULL((PublishXRef.LRS/4.604), '')" lrs)) '^^xsd:double)) |