Age | Commit message (Collapse) | Author |
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/phenotype.scm (phenotypes): Replace gnt:LRS with
gnt:lodScore.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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These tables are referenced when constructing URIs for mouse and rat
data.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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External resources are explicitly defined so we don't need these
prefixes.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* transform/strings.scm (lower-case-and-replace-spaces): New function.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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The removed terms are actually used when constructing terms. Most of
this values are NULL anyways.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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We add the species join since when constructing resource links, this
table is required.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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These terms are useful when constructing a graph for framing purposes
in json-ld.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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This reverts commit 092b9b4967133fc5a04d9fbf2255f4ce07dedb8b.
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* examples/phenotype.scm (phenotypes): Remove "separator" and "proc"
args.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/phenotype.scm (option-spec): Replace
http://genenetwork.org/terms/ with http://genenetwork.org/term/.
* examples/publication.scm (option-spec): Ditto.
* examples/tissue.scm (option-spec): Ditto.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Using "(field Publication Id)" will somehow default to PublishXRef.Id.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/phenotype.scm (phenotypes): Delete "WHERE" clause.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/phenotype.scm (with-documentation): Add "xkos:" to prefixes.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* load-rdf.scm (bulk-load-data): Remove "quit;". This will be done
after indexing.
(index-data): New function
(main): Add index-data.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/genotype.scm (genotypes)[triples]: Replace skos:prefLabel
with rdfs:label.
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* load-rdf.scm (bulk-load-data): Add "quit;" to bulk-load-data command.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/probeset-data.scm: Delete.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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* examples/generif.scm: Import (ice-9 format).
(genewiki-symbols): Transform symbols and their names only. This way
there's no need to transform the symbol names in the other names
thereby preventing duplication.
(gn-genewiki-entries): Use format strings to create the comment blank-node.
(ncbi-genewiki-entries): Ditto.
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
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