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| author | Munyoki Kilyungi | 2023-08-28 14:18:46 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-08-28 14:29:26 +0300 |
| commit | c7279cda5bfc12be67aa657c54fd7157b1f0b374 (patch) | |
| tree | 69490c43e01eba1626fdc4e4bbb2962fbdfb8d70 | |
| parent | 7e57ddf400437f803461cc34d9e113fbeec98822 (diff) | |
| download | gn-transform-databases-c7279cda5bfc12be67aa657c54fd7157b1f0b374.tar.gz | |
Update phenotype dump
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/phenotype.scm | 33 |
1 files changed, 21 insertions, 12 deletions
diff --git a/examples/phenotype.scm b/examples/phenotype.scm index 42396af..ad3c959 100755 --- a/examples/phenotype.scm +++ b/examples/phenotype.scm @@ -21,32 +21,39 @@ (left-join Phenotype "ON Phenotype.Id = PublishXRef.PhenotypeId")) "WHERE PublishXRef.InbredSetId IN (SELECT PublishFreeze.InbredSetId FROM PublishFreeze)") (schema-triples - (gnc:phenotype a skos:Concept) - (gnc:phenotype skos:description "This is a set of controlled terms that are used to describe a given phenotype") (gnt:abbreviation a owl:ObjectProperty) - (gnt:abbreviation rdfs:domain gnc:phenotype) + (gnt:abbreviation rdfs:domain gnc:Phenotype) (gnt:abbreviation skos:definition "The abbreviation used for this resource") (gnt:labCode a owl:ObjectProperty) - (gnt:labCode rdfs:domain gnc:phenotype) + (gnt:labCode rdfs:domain gnc:Phenotype) (gnt:submitter a owl:ObjectProperty) - (gnt:submitter rdfs:domain gnc:phenotype) + (gnt:submitter rdfs:domain gnc:Phenotype) (gnt:submitter skos:definition "A person who submitted this resource to GN") - (gnt:mean rdfs:domain gnc:phenotype) + (gnt:mean a rdf:Property) + (gnt:mean a qb:MeasureProperty) + (gnt:mean rdfs:subPropertyOf sdmx-measure:obsValue) + (gnt:mean rdfs:domain gnc:Phenotype) (gnt:mean rdfs:range xsd:double) - (gnt:LRS rdfs:domain gnc:phenotype) + (gnt:LRS a rdf:Property) + (gnt:LRS a qb:MeasureProperty) + (gnt:LRS rdfs:subPropertyOf sdmx-measure:obsValue) + (gnt:LRS rdfs:domain gnc:Phenotype) (gnt:LRS rdfs:range xsd:double) - (gnt:locus rdfs:domain gnc:phenotype) + (gnt:locus a rdf:Property) + (gnt:locus a qb:MeasureProperty) + (gnt:locus rdfs:subPropertyOf sdmx-measure:obsValue) + (gnt:locus rdfs:domain gnc:Phenotype) (gnt:locus rdfs:range rdfs:Literal) - (gnt:additive rdfs:domain gnc:phenotype) + (gnt:additive rdfs:domain gnc:Phenotype) (gnt:additive rdfs:range xsd:double) - (gnt:sequence rdfs:domain gnc:phenotype) + (gnt:sequence rdfs:domain gnc:Phenotype) (gnt:sequence rdfs:range xsd:integer)) (triples (string->identifier "trait" (field ("CONCAT(IFNULL(InbredSet.Name, PublishXRef.InbredSetId), '_', PublishXRef.Id)" Phenotype))) - (set rdf:type 'gnc:phenotype) - (set gnt:belongsToSet + (set rdf:type 'gnc:Phenotype) + (set xkos:classifiedUnder (string->identifier "set" (field InbredSet Name) #:separator "" @@ -116,10 +123,12 @@ ("owl:" "<http://www.w3.org/2002/07/owl#>") ("gnc:" "<http://genenetwork.org/category/>") ("gnt:" "<http://genenetwork.org/terms/>") + ("sdmx-measure:" "<http://purl.org/linked-data/sdmx/2009/measure#>") ("skos:" "<http://www.w3.org/2004/02/skos/core#>") ("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>") ("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>") ("xsd:" "<http://www.w3.org/2001/XMLSchema#>") + ("qb:" "<http://purl.org/linked-data/cube#>") ("pubmed:" "<http://rdf.ncbi.nlm.nih.gov/pubmed/>"))) (inputs (list |