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| author | Munyoki Kilyungi | 2023-08-28 14:33:45 +0300 |
|---|---|---|
| committer | Munyoki Kilyungi | 2023-08-28 14:33:45 +0300 |
| commit | 24226aeafadfeb81a01ae6105f078dd319965887 (patch) | |
| tree | 413b88ec5f8e6c63c7ab9b2e95ff53494a80e596 | |
| parent | 69800ab334600c464e11cb26ea7f142c42e0fe90 (diff) | |
| download | gn-transform-databases-24226aeafadfeb81a01ae6105f078dd319965887.tar.gz | |
Update how generif metadata is dumped
Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com>
| -rwxr-xr-x | examples/generif.scm | 10 |
1 files changed, 4 insertions, 6 deletions
diff --git a/examples/generif.scm b/examples/generif.scm index 8058b37..a5930ad 100755 --- a/examples/generif.scm +++ b/examples/generif.scm @@ -46,13 +46,11 @@ (left-join Species "USING (SpeciesId)")) "GROUP BY GeneId ORDER BY BINARY symbol") (schema-triples - (gnt:belongsToSpecies rdfs:domain gnc:strain) - (gnt:belongsToSpecies rdfs:domain gnc:NCBIWikiEntry) (gnt:symbol rdfs:domain gnc:NCBIWikiEntry)) (triples (ontology 'generif: (field GeneRIF_BASIC GeneId)) (multiset gnt:symbol (string-split (field ("GROUP_CONCAT(DISTINCT symbol)" symbol)) #\,)) - (multiset gnt:belongsToSpecies + (multiset xkos:classifiedUnder (string-split (field ("GROUP_CONCAT(DISTINCT Species.SpeciesName)" species)) #\,)) @@ -73,8 +71,6 @@ (gnc:GeneWikiEntry a rdfs:Class) (gnc:GNWikiEntry rdfs:subClassOf gnc:GeneWikiEntry) (gnc:GNWikiEntry rdfs:comment "Represents GeneRIF Entries entered from GeneNetwork") - (gnt:belongsToCategory rdfs:domain gnc:GNWikiEntry) - (gnt:belongsToSpecies rdfs:domain gnc:GNWikiEntry) (gnt:symbol rdfs:domain gnc:GNWikiEntry)) (triples (string->identifier @@ -99,7 +95,7 @@ (field ("GROUP_CONCAT(DISTINCT GeneCategory.Name SEPARATOR '$$')" GeneCategory)) "$$"))) - (set gnt:belongsToSpecies + (set xkos:classifiedUnder (string->identifier "" (remap-species-identifiers (field Species Fullname)) @@ -201,6 +197,8 @@ (prefixes '(("rdf:" "<http://www.w3.org/1999/02/22-rdf-syntax-ns#>") ("rdfs:" "<http://www.w3.org/2000/01/rdf-schema#>") + ("skos:" "<http://www.w3.org/2004/02/skos/core#>") + ("xkos:" "<http://rdf-vocabulary.ddialliance.org/xkos#>") ("gn:" "<http://genenetwork.org/id/>") ("gnc:" "<http://genenetwork.org/category/>") ("gnt:" "<http://genenetwork.org/term/>") |