gn-transform-databases - Data transformers for GeneNetwork (particularly to RDF)

Age	Commit message (Expand)	Author
2023-06-12	Use NCBI taxonomy browser instead of uniprot	Munyoki Kilyungi
2023-06-12	Cast longtext fields to fix broket utf-8 characters	Munyoki Kilyungi
2023-06-12	Remove dead comments	Munyoki Kilyungi
2023-06-12	Remove "^[Nn]one$" from some fields from the InfoFiles table	Munyoki Kilyungi
2023-06-12	Default to InfoFiles with the Dataset being a fallback for citations	Munyoki Kilyungi
2023-06-12	Make ((g/ph)enotype/probeset)Dataset subset of Dataset	Munyoki Kilyungi
2023-05-30	Dump OMIM as a normal string without any annotation	Munyoki Kilyungi
2023-05-30	Fix broken utf-8 strings in abstract field	Munyoki Kilyungi
2023-05-30	Add probeset as an extra prefix	Munyoki Kilyungi
2023-05-30	Delete unused prefixes	Munyoki Kilyungi
2023-05-30	Replace species with inbredSet metadata when dumping info-files	Munyoki Kilyungi
2023-05-30	Only dump public data	Munyoki Kilyungi
2023-05-30	Allow upleading all files in a directory to virtuoso	Munyoki Kilyungi
2023-05-30	Replace PUT with a POST when uploading data in virtuoso	Munyoki Kilyungi
2023-05-30	Sanitize a probeset's description	Munyoki Kilyungi
2023-05-30	Update the probeset's identifier(object)	Munyoki Kilyungi
2023-05-30	Make a probeset's tissue multiset	Munyoki Kilyungi
2023-05-30	Make a probeset's alias a multiset	Munyoki Kilyungi
2023-05-30	Move probeset metadata used for a given experiment to it's own dump	Munyoki Kilyungi
2023-05-26	Use a phenotype's abbreviation as it's name	Munyoki Kilyungi
2023-05-26	Make tissue a multi-set during the probeset dump	Munyoki Kilyungi
2023-05-26	Remove some metadata from the probeset dump	Munyoki Kilyungi
2023-05-26	Create a new probesetfreeze dump	Munyoki Kilyungi
2023-05-26	Allow load-rdf script to read in data from a dir	Munyoki Kilyungi
2023-05-26	Return an empty string if a dataset doesn't have a name	Munyoki Kilyungi
2023-05-26	Remove unnecessary fields from probeset dump	Munyoki Kilyungi
2023-05-26	Sanitize a generif entry from GN	Munyoki Kilyungi
2023-05-26	Add genotype dump	Munyoki Kilyungi
2023-05-26	Fix broken utf-8 chars when dumping an investigator's names	Munyoki Kilyungi
2023-05-26	Remove an investigator's email/phone from dump for privacy reasons	Munyoki Kilyungi
2023-05-26	Update a dataset's subject identifier to be a gn url	Munyoki Kilyungi
2023-05-26	Annotate createtime field correctly with xsd:date	Munyoki Kilyungi
2023-05-26	Replace broken char-sets with an empty string	Munyoki Kilyungi
2023-05-26	Replace dump.scm with separete dumps for several tables	Munyoki Kilyungi
2023-05-26	Re-organize dumping macros and associated functions	Munyoki Kilyungi
2023-05-26	Update how info-page-files are dumped	Munyoki Kilyungi
2023-05-26	Update how publications are dumped	Munyoki Kilyungi
2023-05-26	Dump phenotypes	Munyoki Kilyungi
2023-05-26	Delete dump-published-phenotypes	Munyoki Kilyungi
2023-05-26	When a field is null during annotation, return an empty string	Munyoki Kilyungi
2023-05-26	Always use "~a" to output like "display"	Munyoki Kilyungi
2023-05-26	Return an empty string if args passed to ontology is empty	Munyoki Kilyungi
2023-05-26	Replace chars not allowed in RDF	Munyoki Kilyungi
2023-05-26	Dump molecular traits, also referred to as Probesets	Munyoki Kilyungi
2023-05-26	Update how inbred-set in dumped	Munyoki Kilyungi
2023-05-26	Fix how a symbol is displayed in the final RDF	Munyoki Kilyungi
2023-05-26	Update how Species are dumped	Munyoki Kilyungi
2023-04-05	Delete "operation" from fields	Munyoki Kilyungi
2023-04-05	Simplify pattern matching when checking for a node	Munyoki Kilyungi
2023-04-05	Wrap the password in quotes	Munyoki Kilyungi