| Age | Commit message (Expand) | Author |
|---|---|---|
| 2023-07-30 | Add a configuration record-type for for the define macro•••* dump/special-forms.scm: Import (srfi srfi-9 gnu). (<dump-configuration>): New record-type. (define-dump): Use the above record-type. | Munyoki Kilyungi |
| 2023-07-30 | Remap identifiers | Pjotr Prins |
| 2023-07-30 | README: update | Pjotr Prins |
| 2023-07-30 | Remap identifiers | Pjotr Prins |
| 2023-07-29 | README fixes | Pjotr Prins |
| 2023-07-29 | Updated species list | Pjotr Prins |
| 2023-07-21 | Update wikidata metadata•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Add dct: prefix to genotype dump•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Update phenotype dump | Munyoki Kilyungi |
| 2023-07-21 | Make define-dump take extra args as key•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump prefixes correctly when auto-generating docs•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump probesetfreeze metadata using new metadata | Munyoki Kilyungi |
| 2023-07-21 | Dump probeset-metadata using the new syntax•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump genotypes with the new syntax•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Use "gn:" and "gn-term:" when dumping phenotypes•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Replace "publication:" with "pubmed:"•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Use "gn:" and "gn-terms" prefixes•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Make 'inputs' and 'outputs' fields lists•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Remove unnecessary prefixes•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Use a min of 4 should the schema triples be many•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Only document a triple if it exists•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Rename 'gn-id' prefix to 'gn'•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Replace :gn with :gn-id and :gn-term•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump phenotypes with documentation. | Munyoki Kilyungi |
| 2023-07-21 | Make the default ontology "gn-id:"•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump probeset metadata with documentation•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Update tissue dump to use gn-term/gn-id•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Replace gn with gn-term and gn-id where suitable•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Use size of the results set to come up with sparql example•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Replace gn:species with gn-species•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Update dump-species to have lists for inputs and output•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Add "gn:species:" prefix•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Convert symbol to a string when show-casing triples in doc•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Capitalize species identifier•••Replace gn:species_mus_musculus with gn:species:Mus_musculus. | Munyoki Kilyungi |
| 2023-07-21 | Add string-capitalize-first•••* dump/strings.scm: Export string-capitalize-first (string-capitalize-first): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Make string->identifier take optional keyword args•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Make dump-data? default to #f when dumping data•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Rewrite dump-with-documentation to be order-agnostic•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump dataset metadata with documentation•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump publication metadata with documentation•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump tissue metadata with documentation•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Dump species metadata with documentation•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Conditionally dump documentation | Munyoki Kilyungi |
| 2023-07-21 | Make prefix function have an optional ttl?•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Revert "Pass port as an optional argument"•••This reverts commit 195ca590be5533935cf708d49fcb3736b3c78643. | Munyoki Kilyungi |
| 2023-07-21 | Add missing srfi-26 import•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Create a new procedure for shadowing a file port•••* dump/documentation.scm (dump): Export call-with-documentation. (call-with-documentation): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Rename auto-documentation-port -> path•••We don't need to pass around ports as part of a configuration when we can instead pass in a path that can be used to open a port. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Move dump-configuration record type to (dump documentation)•••Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2023-07-21 | Construct example SQL query and expected results | Munyoki Kilyungi |
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index : gn-transform-databases | |
| Data transformers for GeneNetwork (particularly to RDF) |
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