README fixes

2 files changed, 10 insertions, 11 deletions

diff --git a/README.md b/README.md
index 0a4ada8..a81cf08 100644
--- a/README.md
+++ b/README.md
@@ -3,9 +3,7 @@ badge](https://ci.genenetwork.org/badge/dump-genenetwork-database-tests.svg)](ht
 [![dump-genenetwork-database CI
 badge](https://ci.genenetwork.org/badge/dump-genenetwork-database.svg)](https://ci.genenetwork.org/jobs/dump-genenetwork-database)
 
-The GeneNetwork database is being migrated from a relational database to
-a plain text and RDF database. This repository contains code to dump the
-relational database to plain text.
+This repository contains code to dump the metadata in the GeneNetwork relational database to RDF. It requires a connection to a SQL server.
 
 # Using
 
@@ -15,6 +13,12 @@ Drop into a development environment with
 $ guix shell -m manifest.scm
 ```
 
+If the path is not picked up add
+
+```
+export PATH=$GUIX_ENVIRONMENT/bin:$PATH
+```
+
 Build the sources.
 
 ``` shell
@@ -79,17 +83,12 @@ Then, to dump the database to \~/data/dump, run
 ``` shell
 $ guix shell -m manifest.scm -- ./pre-inst-env ./examples/dump-dataset-metadata.scm conn.scm ~/data/dump-data/
 ```
-
-Make sure there is enough free space! It\'s best to dump the database on
-penguin2 where disk space and bandwidth are not significant
-constraints.
-
 ## Validate and load dump
 
 Then, validate the dumped RDF using `rapper` and load it into
 virtuoso. This will load the dumped RDF into the
 `http://genenetwork.org` graph, and will delete all pre-existing data
-in that graph.
+in that graph (FIXME)
 
 ``` shell
 $ guix shell -m manifest.scm -- rapper --input turtle --count ~/data/dump/dump.ttl
diff --git a/conn.scm b/conn.scm
index 8a552ab..aca2835 100644
--- a/conn.scm
+++ b/conn.scm
@@ -1,11 +1,11 @@
 ((sql-username . "webqtlout")
- (sql-password . "webqtlout")
+ (sql-password . "*")
  (sql-database . "db_webqtl")
  (sql-host . "localhost")
  (sql-port . 3306)
  (virtuoso-port . 8891)
  (virtuoso-username . "dba")
- (virtuoso-password . "dba")
+ (virtuoso-password . "*")
  (sparql-scheme . http)
  (sparql-host . "localhost")
  (sparql-port . 8892)