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Guix configuration for genenetwork machines
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genenetwork-development.scm
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Author
2023-07-10
Revert "Fix genotype file path"
Munyoki Kilyungi
2023-07-10
Fix genotype file path
Munyoki Kilyungi
2023-07-10
Disable tests
Munyoki Kilyungi
2023-06-26
Add virtuoso allowed dirs
Munyoki Kilyungi
2023-06-15
Increase threshold for number-of-buffers and maximum-dirty-buffers.
Munyoki Kilyungi
2023-06-08
Share auth-db-path with genenetwork3-pola-wrapper.
Frederick Muriuki Muriithi
2023-06-06
Set AUTH_DB, not AUTH_DB_PATH.
Frederick Muriuki Muriithi
2023-05-31
Do not create xapian build directory.
Arun Isaac
2023-05-31
Use an absolute GN_SERVER_URL.
Frederick Muriuki Muriithi
2023-05-31
Add trailing slash to GN_SERVER_URL.
Frederick Muriuki Muriithi
2023-05-05
Run migrations after tests and before restarting genenetwork3.
Frederick Muriuki Muriithi
2023-04-12
Run tissue on an IP socket.
Arun Isaac
2023-04-12
Disable libgit2 repository ownership validation.
Arun Isaac
2023-04-11
Use tissue package from Guix upstream.
Arun Isaac
2023-04-11
Provide MySQL URI to the xapian indexing script.
Frederick Muriuki Muriithi
2023-02-09
Share the mysqld socket directory into the container.
Arun Isaac
2023-01-18
Add data directory to genenetwork configuration.
Arun Isaac
2023-01-18
Move xapian directory.
Arun Isaac
2023-01-08
Clean up xapian build directory if previous build failed to.
Arun Isaac
2023-01-05
Create custom 502 error page for CD.
Arun Isaac
2022-12-22
Build and install xapian index nightly.
Arun Isaac
2022-12-22
Separate out sudo into a variable.
Arun Isaac
2022-12-22
gn3: tests: Update the tests invocation
Frederick Muriuki Muriithi
2022-11-10
Configure SPARQL endpoint of genenetwork3 server.
Arun Isaac
2022-11-07
Move CD virtuoso ports to 90*.
Arun Isaac
2022-11-04
Import GeneRIF by calling the unified dump script.
Arun Isaac
2022-10-31
Find GeneRIF data in root of export directory.
Arun Isaac
2022-10-31
Use guile-zlib in dump-genenetwork-database CI job.
Arun Isaac
2022-10-31
Ungexp gn2 and gn3 repositories correctly.
Arun Isaac
2022-10-31
Import (guix build utils) in after scripts of CI jobs.
Arun Isaac
2022-10-30
Import GeneRIF into RDF.
Arun Isaac
2022-10-30
Unite genenetwork2 and genenetwork3 development servers.
Arun Isaac
2022-10-28
Expose xapian index to genenetwork3 instead of genenetwork2.
Arun Isaac
2022-10-20
Use GitHub URI for dump-genenetwork-database repo.
Arun Isaac
2022-10-18
Trigger genenetwork2 using laminar, not shepherd.
Arun Isaac
2022-10-17
Use <forge-ip-socket> object to specify webhook port.
Arun Isaac
2022-10-17
Use least-authority-wrapper.
Arun Isaac
2022-10-14
Trigger genenetwork2 tests after genenetwork3 tests.
Arun Isaac
2022-10-14
Comment about triggering of Mechanical Rob.
Arun Isaac
2022-10-14
Convert port number to string on host.
Arun Isaac
2022-10-14
Pull in latest genenetwork3 when running genenetwork2 tests.
Arun Isaac
2022-09-26
Set up xapian search index for genenetwork2 CD.
Arun Isaac
2022-09-21
Use pytest, rather than unittest, to run tests.
Frederick Muriuki Muriithi
2022-09-15
Copy laminar HTML template from git source.
Arun Isaac
2022-09-15
Link to CD from the navigation menu.
Arun Isaac
2022-09-08
Expose continuously deployed genenetwork at cd.genenetwork.org.
Arun Isaac
2022-09-08
Use %genenetwork3-port in genenetwork2 tests.
Arun Isaac
2022-09-06
Expose webhook at ci.genenetwork.org.
Arun Isaac
2022-09-05
Set host name of the laminar nginx server.
Arun Isaac
2022-09-05
Do not list guix channel in CI published channels.scm.
Arun Isaac
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