Age | Commit message (Expand) | Author |
2024-07-16 | run-gemma: show version/help | Pjotr Prins |
2024-07-11 | Handle genotype filename to pass into gemma-wrapper | Pjotr Prins |
2024-07-11 | precompute: runner completes | Pjotr Prins |
2024-07-07 | precompute: making sure order is correct - validating results | Pjotr Prins |
2024-07-07 | precompute: URL is now correct (validated) | Pjotr Prins |
2024-07-07 | precompute: adding metadata | Pjotr Prins |
2024-06-29 | Using a record instead of assoc is cleaner | Pjotr Prins |
2024-06-29 | Get trait features - now need to refactor | Pjotr Prins |
2024-06-29 | for-each can take multiple lists, nice! | Pjotr Prins |
2024-06-29 | for-each can take multiple lists, nice! | Pjotr Prins |
2024-06-28 | Need to get at dataset-id - next to trait-id | Pjotr Prins |
2024-06-27 | Run gemma-wrapper in a container | Pjotr Prins |
2024-06-27 | Simplified gemma runner | Pjotr Prins |
2024-06-26 | Read pheno JSON file and write out pheno file for gemma | Pjotr Prins |
2024-06-18 | Started on run-gemma | Pjotr Prins |
2024-05-21 | Writing json-ld | Pjotr Prins |
2024-05-16 | Add json meta record | Pjotr Prins |
2024-05-16 | Write json file for traits | Pjotr Prins |
2024-05-16 | Use main when running script | Pjotr Prins |
2024-05-14 | Add missing strain. Remove unused call | Pjotr Prins |
2024-05-13 | Write out JSON as a string for traits | Pjotr Prins |
2024-05-13 | Preparing BXD named for strain output in JSON | Pjotr Prins |
2024-05-13 | Start on json output for strains | Pjotr Prins |
2024-05-13 | Simplified a bit and batch size 500 appears to work alright | Pjotr Prins |
2024-05-13 | Batch run getting traits | Pjotr Prins |
2024-05-12 | list-traits handle CLI options --start-id and --next | Pjotr Prins |
2024-05-09 | Full test for whether a data-id belongs to the BXD | Pjotr Prins |
2024-05-08 | Use match to select for BXD traits | Pjotr Prins |
2024-05-08 | Collate trait values | Pjotr Prins |
2024-05-08 | List all traits | Pjotr Prins |
2024-05-07 | list traits: remove unused lines | Pjotr Prins |
2024-05-07 | Fetch a batch of traits so we can process faster | Pjotr Prins |
2024-05-05 | Trait IDs fetch in batch | Pjotr Prins |
2024-05-05 | List data-ids (trait ids) for a batch | Pjotr Prins |
2024-05-03 | README: precompute | Pjotr Prins |
2024-01-06 | Tracking metadat for GN DB | Pjotr Prins |
2024-01-05 | Update ProbeSetXRef to show work | Pjotr Prins |
2024-01-05 | Precompute will run gemma and update the DB status | Pjotr Prins |
2024-01-04 | Call precompute with population name - BXD only, for now | Pjotr Prins |
2024-01-01 | Run gemma-wrapper with metadata | Pjotr Prins |
2023-12-21 | Precompute | Pjotr Prins |
2023-12-02 | Mysql: check database is running. And some comments | Pjotr Prins |
2023-12-02 | Run gemma | Pjotr Prins |
2023-11-24 | Handle genotypes in gemma module | Pjotr Prins |
2023-11-24 | Fetch genotype inds from json file | Pjotr Prins |
2023-11-21 | Adding GEMMA | Pjotr Prins |
2023-11-19 | Iterating through hits | Pjotr Prins |
2023-11-19 | Iterate precompute datasets | Pjotr Prins |
2023-11-18 | Get first BXD dataset for precompute | Pjotr Prins |
2023-11-18 | Reorganize DB handler and fetch first dataset | Pjotr Prins |