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| author | Pjotr Prins | 2023-11-24 09:43:17 +0100 |
|---|---|---|
| committer | Pjotr Prins | 2023-11-24 09:43:17 +0100 |
| commit | 186da1d636f88421d1bbca0033e2d99a3b15e6cd (patch) | |
| tree | 9599ae1cc0bed905bb2ff95a33dd9d1cbccca55a /scripts/precompute | |
| parent | fb22ae84c143a27ddc4699327e8aff6c93a0bf6c (diff) | |
| download | gn-guile-186da1d636f88421d1bbca0033e2d99a3b15e6cd.tar.gz | |
Handle genotypes in gemma module
Diffstat (limited to 'scripts/precompute')
| -rwxr-xr-x | scripts/precompute/precompute-hits.scm | 4 |
1 files changed, 0 insertions, 4 deletions
diff --git a/scripts/precompute/precompute-hits.scm b/scripts/precompute/precompute-hits.scm index e8ba0a2..b9dd746 100755 --- a/scripts/precompute/precompute-hits.scm +++ b/scripts/precompute/precompute-hits.scm @@ -7,7 +7,6 @@ (use-modules (dbi dbi) (gn db mysql) (gn data dataset) - (gn data genotype) (gn data hits) (gn data strains) (gn util convert) @@ -18,9 +17,6 @@ ) -(define inds (geno-inds-bxd "BXD.json")) -(display inds) -(assert (= 235 (length inds))) ;; potentially you want to test connection with mysql client: ;; |