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genenetwork3
auth/implement-authorization-code-flow
bugfix/remove-pre-data-parsing
chores/ctl-wgcna-enhancement
chores/fixes
ci-cd-scripts
correlation-return-fewer-results
data-access-levels-endpoint
feature/autocomplete-generation
feature/lmdb-rust
feature/reimplement-corrmp
fixture-for-pcorrs
gn-guile
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migrate-to-python3.10
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refactor-circular-import
rework-genotype-linking
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GeneNetwork3 REST API for data science and machine learning
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Author
2023-10-27
Implement "GET /metadata/phenotypes/:name".
Munyoki Kilyungi
2023-10-27
Delete get_dataset_metadata.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/publications/:name".
Munyoki Kilyungi
2023-10-27
Add fabio: and prism: to PREFIXES.
Munyoki Kilyungi
2023-10-27
Implement "GET /metadata/datasets/:name".
Munyoki Kilyungi
2023-10-27
Add missing dcat: prefix.
Munyoki Kilyungi
2023-10-27
Derive RDF_PREFIXES string from PREFIXES.
Munyoki Kilyungi
2023-10-27
Remove get_url_local_name when processing result keys.
Munyoki Kilyungi
2023-10-27
Simplify CONSTRUCT query when fetching a dataset's metadata.
Munyoki Kilyungi
2023-10-27
Update RDF prefixes.
Munyoki Kilyungi
2023-10-06
Make argument mandatory
Frederick Muriuki Muriithi
2023-09-21
Fix query in update_cross_reference
zsloan
2023-09-05
Delete un-used import
Munyoki Kilyungi
2023-09-05
Fix C3001: Lambda expression assigned to a variable
Munyoki Kilyungi
2023-09-05
Remove un-necessary string concatenation
Munyoki Kilyungi
2023-09-05
Replace "escape_string" with safe-query parameters
Munyoki Kilyungi
2023-09-05
Remove type annotations for "none_case_attrs" variables
Munyoki Kilyungi
2023-08-24
Change get_pheno_csv_sample_data to use group ID instead of phenotype ID
zsloan
2023-08-17
Fix query for fetching DataId when inserting ProbeSet data
zsloan
2023-08-17
Fix a couple remaining issues with function parameters
zsloan
2023-08-17
Combine pheno/mrna update functions + some other fixes
zsloan
2023-08-17
Fix queries for fetching group names
zsloan
2023-08-17
Fix fetch_trait query for phenotypes
zsloan
2023-08-17
Fix a few misnamed tables in mrna delete/insert functions
zsloan
2023-08-17
Implement ProbeSet sample data editing
zsloan
2023-08-17
Fix probeset sample data and CSV sample data functions
zsloan
2023-08-17
Fix query for retrieving mrna dataset group name
zsloan
2023-08-17
Fix get_mrna_sample_data query
zsloan
2023-08-17
Fix mrna group name query
zsloan
2023-08-17
Remove Id select from probeset metadata query, since it's included in cols
zsloan
2023-08-17
Add function for retrieving mRNA Assay group name
zsloan
2023-08-17
Make several sample_data fetching functions specific to phenotype or mrna ass...
zsloan
2023-08-04
Remove the ORM-dependent `update` function.
Frederick Muriuki Muriithi
2023-08-02
Add deprecation notice to ORM-dependent `update` function
Frederick Muriuki Muriithi
2023-08-02
Remove ORM-dependent `insert` function
Frederick Muriuki Muriithi
2023-08-02
Remove ORM-dependent `fetchall` and `fetchone` functions
Frederick Muriuki Muriithi
2023-07-26
Fix variable name.
Frederick Muriuki Muriithi
2023-07-26
Remove debug statement.
Frederick Muriuki Muriithi
2023-07-26
Fetch `metadata_audit` trail with direct query functions.
Frederick Muriuki Muriithi
2023-07-26
Function to create a metadata audit trail.
Frederick Muriuki Muriithi
2023-07-21
Update a Publication in the database.
Frederick Muriuki Muriithi
2023-07-21
Fetch a publication by its PubMed ID
Frederick Muriuki Muriithi
2023-07-21
Rename function: fetch_publication ==> fetch_publication_by_id
Frederick Muriuki Muriithi
2023-07-19
Extract code dealing with ProbeSets to their own module.
Frederick Muriuki Muriithi
2023-07-19
Extract reusable code to separate module
Frederick Muriuki Muriithi
2023-07-18
Bug: Change from `_id` to `id_` to avoid downstream breakage.
Frederick Muriuki Muriithi
2023-07-18
Fix wrong import, and typing issues.
Frederick Muriuki Muriithi
2023-07-18
Fetch a single publication by `PublicationId`
Frederick Muriuki Muriithi
2023-07-18
Fetch metadata for a single phenotype.
Frederick Muriuki Muriithi
2023-07-18
Fetch single phenotype trait by `dataset_id` and `trait_name`.
Frederick Muriuki Muriithi
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