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AgeCommit message (Expand)Author
2023-10-06Provide keyword argument.Frederick Muriuki Muriithi
2023-10-06Pass in configs/settings as function argumentsFrederick Muriuki Muriithi
2023-09-05Fix C3001: Lambda expression assigned to a variableMunyoki Kilyungi
2023-06-15Fetch genotypes from virtuosoMunyoki Kilyungi
2023-06-12Fetch phenotypes from virtuosoMunyoki Kilyungi
2023-06-12Correct publication function docstringMunyoki Kilyungi
2023-06-07Add publication end-pointMunyoki Kilyungi
2023-06-07Remove trait_metadata endpointMunyoki Kilyungi
2023-06-06Rename dataset_metadata -> datasetMunyoki Kilyungi
2023-04-17Create new endpoint for fetching GeneRIF entriesMunyoki Kilyungi
2023-04-06Remove deprecated `gn3.db_utils.database_connector` functionFrederick Muriuki Muriithi
2023-03-01Fetch sampledataMunyoki Kilyungi
2023-03-01Create API endpoint for fetching trait metadataMunyoki Kilyungi
2023-01-24search: Use decimals, not floats, when converting to megabases.Arun Isaac
2023-01-24search: Support SI suffixes and point locations.Arun Isaac
2023-01-24search: Abstract out parsing of position spec into separate function.Arun Isaac
2023-01-24search: Alias the position prefix with pos.Arun Isaac
2023-01-24search: Rename the mb prefix to position.Arun Isaac
2023-01-24search: Assume triplets mean synteny is requested.Arun Isaac
2023-01-24search: Use comprehension when splitting location.Arun Isaac
2023-01-20mypy: minor fixes to typing errorsFrederick Muriuki Muriithi
2023-01-19search: Downcase before applying SI suffix.Arun Isaac
2023-01-19search: Use decimals, not floats, to manipulate range limits.Arun Isaac
2023-01-19search: Only look for SI suffix in the last character.Arun Isaac
2023-01-19search: Apply SI suffix only if last character is an actual suffix.Arun Isaac
2023-01-18search: Ensure limits of chromosomal interval is non-negative.Arun Isaac
2023-01-18search: Convert point locations to a +/- 50 kbase range.Arun Isaac
2023-01-18Pass species and species prefix as a single query argument.Arun Isaac
2023-01-18auth: Fix tests after enforcing FOREIGN KEY constraintFrederick Muriuki Muriithi
2023-01-18Tolerate WEIGHT operator in parsed search queries.Arun Isaac
2023-01-18Implement synteny search.Arun Isaac
2023-01-18Support location shorthands in search queries.Arun Isaac
2023-01-18Split off search query parsing into separate function.Arun Isaac
2022-12-06Use a dataset's name to fetch it's metadata from RDFMunyoki Kilyungi
2022-11-28Catch a URLError when virtuoso isn't running at allMunyoki Kilyungi
2022-11-28Fix pylint errorsMunyoki Kilyungi
2022-11-28Fail gracefully when virtuoso is not accessibleMunyoki Kilyungi
2022-11-23Create a new REST endpoint for fetching a phenotype's metadataMunyoki Kilyungi
2022-11-02Re-implement RDF related code to use monads in its own moduleMunyoki Kilyungi
2022-10-28Use Xapian index path from app settings.Arun Isaac
2022-10-28Add search.Arun Isaac
2022-07-28Add command to run the sample correlations in an external processFrederick Muriuki Muriithi
2022-05-26Add Endpoint to get menu items for use in UIFrederick Muriuki Muriithi
2022-05-24Run partial correlations with external scriptFrederick Muriuki Muriithi
2022-05-24New script to compute partial correlationsFrederick Muriuki Muriithi
2022-05-21Fix linting errorsFrederick Muriuki Muriithi
2022-05-16Run computation in one-shot asynchronous processFrederick Muriuki Muriithi
2022-05-06Fix linting and typing errorsFrederick Muriuki Muriithi
2022-05-06Hook up pcorrs with target traits computationsFrederick Muriuki Muriithi
2022-03-30Revert "Run json.loads on request.get_json, since request.get_json was just r...Frederick Muriuki Muriithi
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