| Age | Commit message (Expand) | Author |
|---|---|---|
| 2024-09-30 | chore: pylint code fix | John Nduli |
| 2024-09-30 | feat: rollback mysql transaction when rdf insert fails | John Nduli |
| 2024-09-27 | Bug: Use absolute path in place of relative path...Prior to this commit, an assumption is made that the application is invoked with the root of the repository being the current working directory. If this assumption is not met, then the system will not find the appropriate path. This commit forces the use of an absolute path, which should help avoid issues with misplaced relative paths. | Frederick Muriuki Muriithi |
| 2024-09-19 | Remove extraneous keyword....* gn3/api/metadata_api/wiki.py (edit_wiki): Remove comment_id from args---it's already in the insert_dict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-18 | Pass in insert_dict instead of payload in "get_wiki_entries"....* gn3/api/metadata_api/wiki.py (edit_wiki) [insert_dict]: Add species, categories fields. [update_wiki_comment]: Pass in insert_dict, and get rid of redundant keys. Directly pass in sparql_auth's conf params instead of a dict. * gn3/db/rdf/wiki.py (get_next_comment_version): Get rid of redundant params. Use fields directly from insert_dict. Directly pass in sparql_auth's conf params instead of a dict. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-18 | Pass in the createtime as an arg when inserting into RDF graph....* gn3/api/metadata_api/wiki.py (edit_wiki): Pass in the createtime as an arg. * gn3/db/rdf/wiki.py: Remove un-used imports. (update_wiki_comment): Use passed in "created" arg in the createtime field. This makes sure that the SQL/RDF timestamps match. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-18 | Get the next versionId from SQL....* gn3/api/metadata_api/wiki.py (edit_wiki): Get the next version Id from SQL * gn3/db/rdf/wiki.py (get_next_comment_version): Delete. (update_wiki_comment): Provide the next_version id as an extra arg. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-18 | Update "POST /wiki/comment_id/edit" to have RDF edits....* gn3/api/metadata_api/wiki.py: Import update_wiki_comment. (edit_wiki): Update wiki in RDF. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-18 | Fix typo....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-17 | Fix C0411/C0412 pylint errors in gn3.api.metadata.api.wiki....* gn3/api/metadata_api/wiki.py: Re-order imports to fix pylint errors. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-17 | feat: require auth for edit api call | John Nduli |
| 2024-09-12 | Fix pylint errors....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-12 | feat: pick results from sqlite3 if they were stored | John Nduli |
| 2024-09-12 | Initialise the package to ensure setuptools finds it. | Frederick Muriuki Muriithi |
| 2024-09-12 | Make sure dir exists before running R/qtl | Pjotr Prins |
| 2024-09-12 | Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes from | Pjotr Prins |
| 2024-09-12 | rqtl_wrapper: minor fixes | Pjotr Prins |
| 2024-09-12 | Make sure TMPDIR directories exist! | Pjotr Prins |
| 2024-09-12 | Move assert_paths_exist into fs_helpers | Pjotr Prins |
| 2024-09-12 | Change behavior of do_paths_exist to actually throw useful error | Pjotr Prins |
| 2024-09-12 | Getting Rqtl to run on fallback | Pjotr Prins |
| 2024-09-12 | Move assert_paths_exist into fs_helpers | Pjotr Prins |
| 2024-09-12 | Change behavior of do_paths_exist to actually throw useful error | Pjotr Prins |
| 2024-09-12 | Make the gnqa search endpoint a get request. | Alexander_Kabui |
| 2024-09-11 | Replace format-string with f-strings....* gn3/api/llm.py (delete_records): Using format-strings causes pylint to error out. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-11 | Run python-black against file....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-06 | Modify endpoint to use query string. | Alexander_Kabui |
| 2024-09-06 | Merge pull request #188 from genenetwork/chores/merge-gnqa-api...Chores/merge gnqa api | Alexander Kabui |
| 2024-09-05 | Fix type error....* gn3/api/metadata_api/wiki.py: Remove FIXME comment. * gn3/db/wiki.py: Fix type error. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-05 | Use the correct header to request json-ld data....In HTTP, we use content negotiation to server different representations of a resource to the same URI to help the user agent specify which representation is best suited for the user: <https://developer.mozilla.org/en-US/docs/Web/HTTP/Content_negotiation> The "Accept" requet HTTP indicates which content types the user is supposed to understand: <https://developer.mozilla.org/en-US/docs/Web/HTTP/Headers/Accept> * gn3/api/metadata_api/wiki.py (get_wiki_entries): Use the "Accept" header. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-05 | Add comment history....* gn3/api/metadata_api/wiki.py: Import get_comment_history. (get_history): New end-point. * gn3/db/rdf/wiki.py: (get_comment_history): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-05 | Ignore type error and add a FIXME stub....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-05 | Restructure RDF module....* gn3/api/metadata.py: Import constants from gn3.db.rdf * gn3/api/metadata_api/wiki.py: Ditto. Import "get_wiki_entries_by_symbol" from gn3.db.rdf.wiki. * gn3/db/constants.py: Delete file and move all constants ... * gn3/db/rdf.py: ... and functions ... * gn3/db/rdf/__init__.py: ... here. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-09-05 | Sort previos records by datetime. | Alexander_Kabui |
| 2024-09-05 | Apply pep8 formatting. | Alexander_Kabui |
| 2024-09-05 | Create new endpoints for fetching user previous records. | Alexander_Kabui |
| 2024-09-03 | Remove unused imports. | Alexander_Kabui |
| 2024-09-03 | Use Jsonb for storing results. | Alexander_Kabui |
| 2024-09-02 | Fix spacing after punctuation. | Alexander_Kabui |
| 2024-09-02 | Use default datetime for table. | Alexander_Kabui |
| 2024-09-02 | Add spacing after punctuation. | Alexander_Kabui |
| 2024-08-30 | Fix merge conflict. | Alexander_Kabui |
| 2024-08-29 | docs: add function comments | John Nduli |
| 2024-08-29 | feat: add api calls to get categories and last comment | John Nduli |
| 2024-08-29 | Add default timestamp and and primary key for Rating table. | Alexander_Kabui |
| 2024-08-29 | Fix minor typo....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
| 2024-08-29 | Check for empty values when fetching search history. | Alexander_Kabui |
| 2024-08-29 | Use correct http method `Delete` for search history. | Alexander_Kabui |
| 2024-08-29 | Update gnqa search endpoint from POST to PUT. | Alexander_Kabui |
| 2024-08-26 | Fix mypy errors....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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