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| author | Munyoki Kilyungi | 2022-10-12 15:50:33 +0300 |
|---|---|---|
| committer | BonfaceKilz | 2022-11-02 17:36:22 +0300 |
| commit | 6e58cb5ffe3b145aa6ba9b7a54672e7a7f18a0b7 (patch) | |
| tree | 0a7d5d2bbd5774b91188cf90f3c58c9be1d77c31 /gn3/api | |
| parent | 2e85b5c7c4be181182f263fcb644abd173be83c1 (diff) | |
| download | genenetwork3-6e58cb5ffe3b145aa6ba9b7a54672e7a7f18a0b7.tar.gz | |
Re-implement RDF related code to use monads in its own module
* gn3/api/general.py: Replace gn3.db.datasets import with gn3.db.rdf.
(dataset_metadata) <jsonify>: Replace datasets.dataset_metadata with
rdf.get_dataset_metadata.
* gn3/db/datasets.py: Remove unused imports.
(sparql_query, dataset_metadata): Delete.
* gn3/db/rdf.py: (sparql_query, get_dataset_metadata): New functions.
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/general.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gn3/api/general.py b/gn3/api/general.py index e0bfc81..68b128b 100644 --- a/gn3/api/general.py +++ b/gn3/api/general.py @@ -7,7 +7,7 @@ from flask import request from gn3.fs_helpers import extract_uploaded_file from gn3.commands import run_cmd -from gn3.db import datasets +from gn3.db import rdf general = Blueprint("general", __name__) @@ -72,4 +72,4 @@ def run_r_qtl(geno_filestr, pheno_filestr): @general.route("/dataset/<accession_id>") def dataset_metadata(accession_id): """Return info as JSON for dataset with ACCESSION_ID.""" - return jsonify(datasets.dataset_metadata(accession_id)) + return jsonify(rdf.get_dataset_metadata(accession_id).data) |