Age | Commit message (Expand) | Author |
---|---|---|
2024-08-26 | refactor: split out utlities into their modules and change api to use metadata | John Nduli |
2024-08-26 | refactor: clean up wiki edit implementation...* Add better error messages * Create more modular functions | John Nduli |
2024-08-26 | feat: add support for categories in edit query and clearer errors | John Nduli |
2024-08-26 | feat: support for edit wiki entry | John Nduli |
2024-08-09 | Use correct stemming strategy when searching....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-08-09 | Add RIF/WIKI as search prefixes for XRF/XWK....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-08-01 | Stem group field regardless of case....* gn3/api/search.py (parse_boolean_prefixed_field): New function. (parse_query): Use parse_boolean_prefixed_field for the group field. | Arun Isaac |
2024-08-01 | Stem all the time....With the STEM_SOME, xapian does not stem query words that start with a capital letter. Hence, we switch to the STEM_ALL strategy. * gn3/api/search.py (parse_query): Set stemming strategy to STEM_ALL. | Arun Isaac |
2024-07-08 | Pass output directory to R/qtl script instead of pulling it from the...environment Also fixes issue where the control marker keyword was wrong | zsloan |
2024-07-05 | fix: return query error message from xapian | John Nduli |
2024-07-03 | fix: use correct prefix and index key; group wiki cache query | John Nduli |
2024-07-03 | feat: add wikidata prefix to search api | John Nduli |
2024-06-26 | Increase max number of results to 50000 for Xapian search...This change needs to be accompanied by a change in GN2! If it's lower than the GN2 MAX_SEARCH_RESULTS value, searches will throw an error. | zsloan |
2024-06-12 | fix: use current_app's logger to log db errors | John Nduli |
2024-06-01 | Add geneRIF prefix....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-05-20 | Delete search endpoints for datasets/publications....* gn3/api/metadata.py: Delete "query_and_frame" import. (search_datasets): Delete. (search_publications): Ditto. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-05-09 | Improve error messaging for use of invalid fahamu token. | Alexander_Kabui |
2024-05-01 | pep8 formatting | Alexander_Kabui |
2024-05-01 | Delete debug code | Alexander_Kabui |
2024-05-01 | Debug: check for if config is loaded in gn3. | Alexander_Kabui |
2024-05-01 | Fix: fix string formatting error and remove unused imports. | Alexander_Kabui |
2024-05-01 | Refactoring... *general cleanup for debug code * improve error messaging for successful rating | Alexander_Kabui |
2024-05-01 | Debug:fix issue use current_app to fetch config | Alexander_Kabui |
2024-05-01 | Debug Process for LLM_DB_PATH... * this commit is a debugging process for llm_path on cd * issue: writes to db but not correct path | Alexander_Kabui |
2024-05-01 | Add more error info for Database Open error raised | Alexander_Kabui |
2024-04-30 | Add a general Exception for the /rating api | Alexander_Kabui |
2024-04-30 | Replace SQLITE_DB_PATH with LLM_DB_PATH for llm db path. | Alexander_Kabui |
2024-04-30 | Add docstring to view_history function....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-04-30 | Use JWT tokens from gn-auth....* gn3/api/metadata.py: Import time, jwt, AUthorisationError. (edit_dataset): Use JWT tokens from gn-auth and validate them. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-04-30 | Add an endpoint to query a dataset's git history from it's id....* gn3/api/metadata.py: Import get_history. (view_history): New endpoint. * gn3/db/datasets.py (get_history): New function. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-04-30 | Rename retrieve_dataset_metadata to retrieve_metadata....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-04-15 | Delete unused imports....* gn3/api/llm.py: (rate_document, logging): Remove unused imports. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-03-26 | add sqlite-db-path config | Alexander_Kabui |
2024-03-26 | fetch pubmed file from /gn-meta/lit | Alexander_Kabui |
2024-03-25 | pep8 formatting | Alexander_Kabui |
2024-03-25 | save db data on SQLITE_PATH file path | Alexander_Kabui |
2024-03-25 | fix user_id type | Alexander_Kabui |
2024-03-25 | enable logigng info for api <rating> | Alexander_Kabui |
2024-03-25 | match user id to type str | Alexander_Kabui |
2024-03-25 | fetch tmpdir from current app connfig | Alexander_Kabui |
2024-03-25 | fix db path issue for lllm | Alexander_Kabui |
2024-03-25 | use data dir for files | Alexander_Kabui |
2024-03-22 | dump gnqa rating data to db | Alexander_Kabui |
2024-02-15 | Use correct names for dataset entries in json result....Since we are appending to an already flattened json-ld file, we don't need to add the prefixes. * gn3/api/metadata.py (DATASET_CONTEXT): Add missing "experimentType" key. * gn3/db/datasets.py (retrieve_dataset_metadata): Match the __subject dict with entries from DATASET_CONTEXT. Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-02-14 | Remove try ... except clauses around RDF endpoints....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-02-14 | Stem the dataset's id before constructing the path....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-02-13 | Use correct path for dataset metadata files....* gn3/api/metadata.py (datasets): Use "gn-docs/general/datasets". Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-02-13 | Update "dataset/<name>" API endpoint to fetch metadata from files....Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | Munyoki Kilyungi |
2024-01-26 | centralize common errors | Alexander_Kabui |
2024-01-26 | Feature/gn llm caching (#148)...* add logic for querying user gnqa search result * add api endpoints for querying users:qnqa-search-terms,gnqa-results | Alexander Kabui |