| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2025-02-19 | fix: Read and parse correct permutation file from R/qtl1 | Alexander_Kabui | |
| 2025-01-09 | Minor fix. | Alexander_Kabui | |
| 2025-01-09 | feat: Add a decorator function to enable streaming functinality. | Alexander_Kabui | |
| 2025-01-09 | fix: pylint fix. | Alexander_Kabui | |
| 2025-01-09 | refactor: import streaming functionality from module. | Alexander_Kabui | |
| 2025-01-08 | refactor: Modify error message for run_process function. | Alexander_Kabui | |
| 2025-01-08 | refactor: Return results as dict with correct metadata for subprocess. | Alexander_Kabui | |
| 2025-01-08 | refactor: Pass arg commands to subprocess as a list. | Alexander_Kabui | |
| * Use with open context for subprocess. * Correctly handle subprocess error. | |||
| 2025-01-07 | feat: Revert commit 688d6a4. | Alexander_Kabui | |
| 2025-01-07 | feat: remove shell True to for debug. | Alexander_Kabui | |
| 2024-12-20 | Add todo note for writing rqtl file. | Alexander_Kabui | |
| 2024-12-20 | fix: Pylint fixes. | Alexander_Kabui | |
| 2024-12-20 | feat: Enable streaming for output. | Alexander_Kabui | |
| 2024-12-17 | feat: Init integrate streaming functionality to rqtl1. | Alexander_Kabui | |
| 2024-12-07 | Check whether genofile/phenofile exist separately. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-27 | Bug: Use absolute path in place of relative path | Frederick Muriuki Muriithi | |
| Prior to this commit, an assumption is made that the application is invoked with the root of the repository being the current working directory. If this assumption is not met, then the system will not find the appropriate path. This commit forces the use of an absolute path, which should help avoid issues with misplaced relative paths. | |||
| 2024-09-12 | Fix pylint errors. | Munyoki Kilyungi | |
| Signed-off-by: Munyoki Kilyungi <me@bonfacemunyoki.com> | |||
| 2024-09-12 | Make sure dir exists before running R/qtl | Pjotr Prins | |
| 2024-09-12 | Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes from | Pjotr Prins | |
| 2024-09-12 | Make sure TMPDIR directories exist! | Pjotr Prins | |
| 2024-09-12 | Move assert_paths_exist into fs_helpers | Pjotr Prins | |
| 2024-09-12 | Change behavior of do_paths_exist to actually throw useful error | Pjotr Prins | |
| 2024-09-12 | Getting Rqtl to run on fallback | Pjotr Prins | |
| 2024-09-12 | Move assert_paths_exist into fs_helpers | Pjotr Prins | |
| 2024-09-12 | Change behavior of do_paths_exist to actually throw useful error | Pjotr Prins | |
| 2024-07-08 | Pass output directory to R/qtl script instead of pulling it from the | zsloan | |
| environment Also fixes issue where the control marker keyword was wrong | |||
| 2022-03-22 | Fixes pylint errors | zsloan | |
| 2022-03-22 | Fix issue that causes R/qtl to always run pair-scan even if pair-scan isn't ↵ | zsloan | |
| selected | |||
| 2022-03-22 | Added genofile name to inputs for processing R/qtl pair-scan results, since ↵ | zsloan | |
| it's needed to store the proximal/distal markers for each position | |||
| 2022-03-22 | Fix imports to import both process_rqtl_mapping and process_rqtl_pairscan in ↵ | zsloan | |
| api/rqtl.py | |||
| 2022-03-22 | Added pairscan boolean kwarg and process_rqtl_pairscan function for reading ↵ | zsloan | |
| in pairscan results + renamed process_rqtl_output to process_rqtl_mapping to distinguish between that and pairscan | |||
| 2021-09-03 | Add covarstruct as a possible keyword for the rqtl_wrapper.R script (not ↵ | zsloan | |
| integrated into the script yet though) | |||
| 2021-06-18 | Fixed pylint issues | zsloan | |
| 2021-06-18 | Fixed issue where all bool kwargs were always being passed to ↵ | zsloan | |
| generate_rqtl_cmd and also made code check if output file already exists (so caching works) | |||
| 2021-05-25 | Include code that processes rqtl output files and returns actual results ↵ | zsloan | |
| instead of just the output filename | |||
| 2021-05-18 | Account for boolean kwargs in compute() by storing them in a list, since ↵ | zsloan | |
| they don't have corresponding values | |||
| 2021-05-18 | Fixed variety of issues detected by pylint | zsloan | |
| 2021-05-17 | Read in kwargs fromrequest and pass the command, tmpdir, and kwargs to ↵ | zsloan | |
| generate_rqtl_cmd which returns the actual command and output path | |||
| 2021-05-17 | Add rqtl.py for rqtl endpoints | zsloan | |
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index : genenetwork3 | |
| GeneNetwork3 REST API for data science and machine learning |
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