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| author | Pjotr Prins | 2024-04-03 13:24:32 +0200 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-09-12 07:40:04 -0500 |
| commit | 9d221ad285e4d41e0a83af88bef8f221356848ba (patch) | |
| tree | aef89f20b2b8d87641a134a0c59f064a98a0cd44 /gn3/api/rqtl.py | |
| parent | e10b62f88432856019540074fd19b6acdb70d4ad (diff) | |
| download | genenetwork3-9d221ad285e4d41e0a83af88bef8f221356848ba.tar.gz | |
Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes from
Diffstat (limited to 'gn3/api/rqtl.py')
| -rw-r--r-- | gn3/api/rqtl.py | 4 |
1 files changed, 2 insertions, 2 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index bd50900..dd9078f 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -46,8 +46,8 @@ run the rqtl_wrapper script and return the results as JSON rqtl_output = {} if not os.path.isfile(os.path.join(current_app.config.get("TMPDIR"), - "output", rqtl_cmd.get('output_file'))): - os.system(__pk__(rqtl_cmd.get('rqtl_cmd'))) + "gn3", rqtl_cmd.get('output_file'))): + os.system(rqtl_cmd.get('rqtl_cmd')) if "pairscan" in rqtl_bool_kwargs: rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile) |