diff options
| author | zsloan | 2021-08-26 20:17:14 +0000 |
|---|---|---|
| committer | zsloan | 2022-03-22 19:08:01 +0000 |
| commit | 40e85090b60ef002723b614fd712b6affbd68176 (patch) | |
| tree | 9ac636b79491033c771cbe1f0d2bfee1e53be882 /gn3/api/rqtl.py | |
| parent | 35f0784ee32ccc76416d184ac65e8cad6f7aa490 (diff) | |
| download | genenetwork3-40e85090b60ef002723b614fd712b6affbd68176.tar.gz | |
Added genofile name to inputs for processing R/qtl pair-scan results, since it's needed to store the proximal/distal markers for each position
Diffstat (limited to 'gn3/api/rqtl.py')
| -rw-r--r-- | gn3/api/rqtl.py | 2 |
1 files changed, 1 insertions, 1 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index abce705..9aab9fa 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -49,7 +49,7 @@ run the rqtl_wrapper script and return the results as JSON os.system(rqtl_cmd.get('rqtl_cmd')) if "pairscan" in boolean_kwargs: - rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file')) + rqtl_output['results'] = process_rqtl_pairscan(rqtl_cmd.get('output_file'), genofile) else: rqtl_output['results'] = process_rqtl_mapping(rqtl_cmd.get('output_file')) |