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path: root/gn3/api/rqtl.py
AgeCommit message (Expand)Author
2025-02-19fix: Read and parse correct permutation file from R/qtl1Alexander_Kabui
2025-01-09Minor fix.Alexander_Kabui
2025-01-09feat: Add a decorator function to enable streaming functinality.Alexander_Kabui
2025-01-09fix: pylint fix.Alexander_Kabui
2025-01-09refactor: import streaming functionality from module.Alexander_Kabui
2025-01-08refactor: Modify error message for run_process function.Alexander_Kabui
2025-01-08refactor: Return results as dict with correct metadata for subprocess.Alexander_Kabui
2025-01-08refactor: Pass arg commands to subprocess as a list.Alexander_Kabui
2025-01-07feat: Revert commit 688d6a4.Alexander_Kabui
2025-01-07feat: remove shell True to for debug.Alexander_Kabui
2024-12-20Add todo note for writing rqtl file.Alexander_Kabui
2024-12-20fix: Pylint fixes.Alexander_Kabui
2024-12-20feat: Enable streaming for output.Alexander_Kabui
2024-12-17feat: Init integrate streaming functionality to rqtl1.Alexander_Kabui
2024-12-07Check whether genofile/phenofile exist separately.Munyoki Kilyungi
2024-09-27Bug: Use absolute path in place of relative pathFrederick Muriuki Muriithi
2024-09-12Fix pylint errors.Munyoki Kilyungi
2024-09-12Make sure dir exists before running R/qtlPjotr Prins
2024-09-12Replace TMPDIR/output with TMPDIR/gn3 so it is clear where it comes fromPjotr Prins
2024-09-12Make sure TMPDIR directories exist!Pjotr Prins
2024-09-12Move assert_paths_exist into fs_helpersPjotr Prins
2024-09-12Change behavior of do_paths_exist to actually throw useful errorPjotr Prins
2024-09-12Getting Rqtl to run on fallbackPjotr Prins
2024-09-12Move assert_paths_exist into fs_helpersPjotr Prins
2024-09-12Change behavior of do_paths_exist to actually throw useful errorPjotr Prins
2024-07-08Pass output directory to R/qtl script instead of pulling it from thezsloan
2022-03-22Fixes pylint errorszsloan
2022-03-22Fix issue that causes R/qtl to always run pair-scan even if pair-scan isn't s...zsloan
2022-03-22Added genofile name to inputs for processing R/qtl pair-scan results, since i...zsloan
2022-03-22Fix imports to import both process_rqtl_mapping and process_rqtl_pairscan in ...zsloan
2022-03-22Added pairscan boolean kwarg and process_rqtl_pairscan function for reading i...zsloan
2021-09-03Add covarstruct as a possible keyword for the rqtl_wrapper.R script (not inte...zsloan
2021-06-18Fixed pylint issueszsloan
2021-06-18Fixed issue where all bool kwargs were always being passed to generate_rqtl_c...zsloan
2021-05-25Include code that processes rqtl output files and returns actual results inst...zsloan
2021-05-18Account for boolean kwargs in compute() by storing them in a list, since they...zsloan
2021-05-18Fixed variety of issues detected by pylintzsloan
2021-05-17Read in kwargs fromrequest and pass the command, tmpdir, and kwargs to genera...zsloan
2021-05-17Add rqtl.py for rqtl endpointszsloan
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