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| author | Pjotr Prins | 2024-04-03 13:28:49 +0200 |
|---|---|---|
| committer | Frederick Muriuki Muriithi | 2024-09-12 07:42:01 -0500 |
| commit | 4dd2ab8da310a34e598553ef951d3233ded9d1ab (patch) | |
| tree | f7e62eef1886607cf494ea94993436044ff72191 /gn3/api | |
| parent | 9d221ad285e4d41e0a83af88bef8f221356848ba (diff) | |
| download | genenetwork3-4dd2ab8da310a34e598553ef951d3233ded9d1ab.tar.gz | |
Make sure dir exists before running R/qtl
Diffstat (limited to 'gn3/api')
| -rw-r--r-- | gn3/api/rqtl.py | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/gn3/api/rqtl.py b/gn3/api/rqtl.py index dd9078f..68299d4 100644 --- a/gn3/api/rqtl.py +++ b/gn3/api/rqtl.py @@ -38,6 +38,10 @@ run the rqtl_wrapper script and return the results as JSON if kwarg in boolean_kwargs: rqtl_bool_kwargs.append(kwarg) + outdir = os.path.join(get_tmpdir(),"gn3") + if not os.path.isdir(outdir): + os.mkdir(outdir) + rqtl_cmd = generate_rqtl_cmd( rqtl_wrapper_cmd='scripts/rqtl_wrapper.R', rqtl_wrapper_kwargs=rqtl_kwargs, |