genecup - Deep learning method for linking pubmed with custom ontology

Age	Commit message (Expand)	Author
17 hours	1.9.1 release HEAD master	Pjotr Prins
17 hours	Get rid of outdated error	Pjotr Prins
17 hours	Use template to show intermediate phase	Pjotr Prins
17 hours	Show page when calling GEMINI API	Pjotr Prins
17 hours	Some cleanup and make GEMINI API cache work	Pjotr Prins
18 hours	The Gemini call now retries up to 3 times with a backoff delay (2s, then 4s) ...	Pjotr Prins
18 hours	Also cache gemini results	Pjotr Prins
18 hours	Cache PMID search hits	Pjotr Prins
18 hours	Make it more DRY	Pjotr Prins
18 hours	Add hybrid search finds us more abstracts	Pjotr Prins
19 hours	Add hybrid search	Pjotr Prins
23 hours	Add local search test	Pjotr Prins
23 hours	Add a test for a network fetch	Pjotr Prins
23 hours	Added test for esearch	Pjotr Prins
24 hours	Settings now use edirect updated EDIRECT_LOCAL_ARCHIVE	Pjotr Prins
24 hours	Use the short fetch-pubmed -path /path/to/archive → xfetch -db pubmed repla...	Pjotr Prins
24 hours	Add test framework	Pjotr Prins
25 hours	Unpacking XML files as an alternative for fetch-pubmed works, but not complet...	Pjotr Prins
25 hours	Update (README)	Pjotr Prins
25 hours	Add examples using local fethch	Pjotr Prins
25 hours	Example (guix.scm) add load path	Pjotr Prins
3 days	Patch (edirect) to avoid panic during indexing	Pjotr Prins
3 days	Fix edirect (guix) with unzip	Pjotr Prins
5 days	add (edirect) gzip	Pjotr Prins
5 days	fix (edirect)	Pjotr Prins
5 days	fix (edirect)	Pjotr Prins
5 days	Path fixes (edirect) and renamed package to edirect-25	Pjotr Prins
5 days	Still fixing edirect	Pjotr Prins
5 days	Fix (edirect) pubmed.ini	Pjotr Prins
5 days	Fixing edirect	Pjotr Prins
5 days	Fix edirect error ERROR: No data supplied to stdin or file, mode: 'Dcrw--w-...	Pjotr Prins
6 days	Added recent edirect tooling (guix.scm)	Pjotr Prins
7 days	Add systemd example for fetching the archive	Pjotr Prins
8 days	Update README	Pjotr Prins
8 days	Add example search	Pjotr Prins
8 days	Move API key into credentials file [AI]	Pjotr Prins
8 days	Split pipe commands, so we can see how long they take	Pjotr Prins
8 days	Show gemini error in result	Pjotr Prins
8 days	Missing comma	Pjotr Prins
8 days	Amend path again	Pjotr Prins
8 days	All three Gemini API calls now print the response to the console	Pjotr Prins
9 days	Fix search for PubMed/Archive	Pjotr Prins
9 days	Revert on PubMed injection	Pjotr Prins
9 days	Use punkt_tab instead of punkt. See https://openillumi.com/en/en-nltk-punkt-t...	Pjotr Prins
9 days	Fix pubmed path	Pjotr Prins
9 days	Moving old files	Pjotr Prins
9 days	Move unused files	Pjotr Prins
9 days	Add remark on unused files	Pjotr Prins
9 days	Debugging finding files	Pjotr Prins
9 days	Print external commands to console	Pjotr Prins