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| author | Pjotr Prins | 2026-04-05 10:29:05 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2026-04-05 10:29:05 +0200 |
| commit | a8f87dd3acfdcca2c1f29dc23345eed0d50ee1ba (patch) | |
| tree | a02d09f9d9f652bc4daaf9dcb6dbda8d4225a085 | |
| parent | cba2676f09001dd84495a7926bc0a019e0fcb4d0 (diff) | |
| download | genecup-a8f87dd3acfdcca2c1f29dc23345eed0d50ee1ba.tar.gz | |
Update (README)
| -rw-r--r-- | README.md | 6 |
1 files changed, 3 insertions, 3 deletions
diff --git a/README.md b/README.md index 0df4841..9e52138 100644 --- a/README.md +++ b/README.md @@ -45,19 +45,19 @@ Following the instruction provided by NCBI: https://www.nlm.nih.gov/dataguide/ed Point environment variables to this dir and run in the local source tree: ``` -env EDIRECT_PUBMED_MASTER=/export/PubMed `guix build -L . genecup-gemini`/bin/genecup --port 4201 +env EDIRECT_PUBMED_ARCHIVE=/export/PubMed `guix build -L . genecup-gemini`/bin/genecup --port 4201 ``` You can run from a proper container: ``` -guix shell -L . -C -N -F genecup-gemini -- genecup --port 4201 +guix shell -L ~/guix-bioinformatics -L . -C -N -F genecup-gemini -- genecup --port 4201 ``` Environment variables used: ``` -EDIRECT_PUBMED_MASTER: PubMed datadir (defaults to built-in minipubmed) +EDIRECT_PUBMED_ARCHIVE: PubMed datadir (defaults to built-in minipubmed) GENECUP_DATADIR: SQLITE DB directory (default .) NLTK_DATA: punkt_tab directory (defaults to built-in nltk-punkt) TMPDIR (default /tmp) |