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| author | Pjotr Prins | 2026-04-01 09:40:14 +0200 |
|---|---|---|
| committer | Pjotr Prins | 2026-04-01 09:40:14 +0200 |
| commit | ea22589d27e8ca9dac3f7ee9662853deeb7e26ec (patch) | |
| tree | 3c2bc0e645559cc250a0985e81298c4b1fcae9b9 | |
| parent | 1f1fd7c2a2fd86cda9ba6be593b111a4c845ecf5 (diff) | |
| download | genecup-ea22589d27e8ca9dac3f7ee9662853deeb7e26ec.tar.gz | |
Still fixing edirect
| -rw-r--r-- | guix.scm | 14 |
1 files changed, 10 insertions, 4 deletions
diff --git a/guix.scm b/guix.scm index 552e2a0..3d4856b 100644 --- a/guix.scm +++ b/guix.scm @@ -26,6 +26,9 @@ #:use-module (gnu packages base) #:use-module (gnu packages bash) #:use-module (gnu packages compression) + #:use-module (gnu packages curl) + #:use-module (gnu packages wget) + #:use-module (gnu packages gawk) #:use-module (gnu packages golang) #:use-module (gnu packages golang-build) #:use-module (gnu packages golang-compression) @@ -211,13 +214,16 @@ GeneCup with four gene symbols (gria1, crhr1, drd2, and penk).") (copy-recursively "extern" (string-append bin "/extern"))))) (add-after 'install 'wrap-programs - (lambda* (#:key outputs #:allow-other-keys) + (lambda* (#:key inputs outputs #:allow-other-keys) (let* ((out (assoc-ref outputs "out")) - (bin (string-append out "/bin"))) + (bin (string-append out "/bin")) + (coreutils (assoc-ref inputs "coreutils"))) ;; Don't wrap .sh (sourced) or .Linux (Go binaries) (for-each (lambda (f) - (wrap-program f `("PATH" ":" prefix (,bin)))) + (wrap-program f + `("PATH" ":" prefix + (,bin ,(string-append coreutils "/bin"))))) (filter (lambda (f) (and (not (string-suffix? ".sh" f)) @@ -261,7 +267,7 @@ GeneCup with four gene symbols (gria1, crhr1, drd2, and penk).") go-github-com-surgebase-porter2 go-golang-org-x-sys go-golang-org-x-text)) - (propagated-inputs (list grep sed)) + (propagated-inputs (list curl wget grep sed gawk coreutils)) (inputs (list bash-minimal coreutils perl perl-xml-simple python)) (home-page "https://www.ncbi.nlm.nih.gov/books/NBK179288/") (synopsis "Tools for accessing the NCBI's set of databases") |