genecup - Deep learning method for linking pubmed with custom ontology

Age	Commit message (Expand)	Author
40 hours	Add local search test	Pjotr Prins
40 hours	Add a test for a network fetch	Pjotr Prins
40 hours	Added test for esearch	Pjotr Prins
41 hours	Settings now use edirect updated EDIRECT_LOCAL_ARCHIVE	Pjotr Prins
41 hours	Use the short fetch-pubmed -path /path/to/archive → xfetch -db pubmed repla...	Pjotr Prins
41 hours	Add test framework	Pjotr Prins
41 hours	Unpacking XML files as an alternative for fetch-pubmed works, but not complet...	Pjotr Prins
41 hours	Update (README)	Pjotr Prins
42 hours	Add examples using local fethch	Pjotr Prins
42 hours	Example (guix.scm) add load path	Pjotr Prins
4 days	Patch (edirect) to avoid panic during indexing	Pjotr Prins
4 days	Fix edirect (guix) with unzip	Pjotr Prins
6 days	add (edirect) gzip	Pjotr Prins
6 days	fix (edirect)	Pjotr Prins
6 days	fix (edirect)	Pjotr Prins
6 days	Path fixes (edirect) and renamed package to edirect-25	Pjotr Prins
6 days	Still fixing edirect	Pjotr Prins
6 days	Fix (edirect) pubmed.ini	Pjotr Prins
6 days	Fixing edirect	Pjotr Prins
6 days	Fix edirect error ERROR: No data supplied to stdin or file, mode: 'Dcrw--w-...	Pjotr Prins
7 days	Added recent edirect tooling (guix.scm)	Pjotr Prins
7 days	Add systemd example for fetching the archive	Pjotr Prins
9 days	Update README	Pjotr Prins
9 days	Add example search	Pjotr Prins
9 days	Move API key into credentials file [AI]	Pjotr Prins
9 days	Split pipe commands, so we can see how long they take	Pjotr Prins
9 days	Show gemini error in result	Pjotr Prins
9 days	Missing comma	Pjotr Prins
9 days	Amend path again	Pjotr Prins
9 days	All three Gemini API calls now print the response to the console	Pjotr Prins
10 days	Fix search for PubMed/Archive	Pjotr Prins
10 days	Revert on PubMed injection	Pjotr Prins
10 days	Use punkt_tab instead of punkt. See https://openillumi.com/en/en-nltk-punkt-t...	Pjotr Prins
10 days	Fix pubmed path	Pjotr Prins
10 days	Moving old files	Pjotr Prins
10 days	Move unused files	Pjotr Prins
10 days	Add remark on unused files	Pjotr Prins
10 days	Debugging finding files	Pjotr Prins
10 days	Print external commands to console	Pjotr Prins
10 days	Show ENV vars on startup [AI]	Pjotr Prins
10 days	Move dead code to old/server.py	Pjotr Prins
10 days	README: add info on env vars	Pjotr Prins
10 days	GENECUP_DATADIR configures sqlite DB location	Pjotr Prins
10 days	gemini logs to the console	Pjotr Prins
11 days	edits	Pjotr Prins
11 days	Create genecup executable (guix) to run from a shell	Pjotr Prins
11 days	Update instructions (guix.scm)	Pjotr Prins
11 days	Remove comment (guix)	Pjotr Prins
11 days	Make sure paths are available	Pjotr Prins
11 days	Using packages (guix) for minipub and punkt	Pjotr Prins