genecup - Deep learning method for linking pubmed with custom ontology

Age	Commit message (Expand)	Author
5 days	Some cleanup and make GEMINI API cache work	Pjotr Prins
5 days	The Gemini call now retries up to 3 times with a backoff delay (2s, then 4s) ...	Pjotr Prins
5 days	Also cache gemini results	Pjotr Prins
5 days	Cache PMID search hits	Pjotr Prins
5 days	Make it more DRY	Pjotr Prins
5 days	Add hybrid search finds us more abstracts	Pjotr Prins
5 days	Add hybrid search	Pjotr Prins
6 days	Add local search test	Pjotr Prins
6 days	Add a test for a network fetch	Pjotr Prins
6 days	Added test for esearch	Pjotr Prins
6 days	Settings now use edirect updated EDIRECT_LOCAL_ARCHIVE	Pjotr Prins
6 days	Use the short fetch-pubmed -path /path/to/archive → xfetch -db pubmed repla...	Pjotr Prins
6 days	Add test framework	Pjotr Prins
6 days	Unpacking XML files as an alternative for fetch-pubmed works, but not complet...	Pjotr Prins
6 days	Update (README)	Pjotr Prins
6 days	Add examples using local fethch	Pjotr Prins
6 days	Example (guix.scm) add load path	Pjotr Prins
8 days	Patch (edirect) to avoid panic during indexing	Pjotr Prins
8 days	Fix edirect (guix) with unzip	Pjotr Prins
10 days	add (edirect) gzip	Pjotr Prins
10 days	fix (edirect)	Pjotr Prins
10 days	fix (edirect)	Pjotr Prins
10 days	Path fixes (edirect) and renamed package to edirect-25	Pjotr Prins
10 days	Still fixing edirect	Pjotr Prins
10 days	Fix (edirect) pubmed.ini	Pjotr Prins
10 days	Fixing edirect	Pjotr Prins
10 days	Fix edirect error ERROR: No data supplied to stdin or file, mode: 'Dcrw--w-...	Pjotr Prins
11 days	Added recent edirect tooling (guix.scm)	Pjotr Prins
11 days	Add systemd example for fetching the archive	Pjotr Prins
13 days	Update README	Pjotr Prins
13 days	Add example search	Pjotr Prins
13 days	Move API key into credentials file [AI]	Pjotr Prins
13 days	Split pipe commands, so we can see how long they take	Pjotr Prins
13 days	Show gemini error in result	Pjotr Prins
13 days	Missing comma	Pjotr Prins
13 days	Amend path again	Pjotr Prins
13 days	All three Gemini API calls now print the response to the console	Pjotr Prins
14 days	Fix search for PubMed/Archive	Pjotr Prins
14 days	Revert on PubMed injection	Pjotr Prins
14 days	Use punkt_tab instead of punkt. See https://openillumi.com/en/en-nltk-punkt-t...	Pjotr Prins
14 days	Fix pubmed path	Pjotr Prins
14 days	Moving old files	Pjotr Prins
14 days	Move unused files	Pjotr Prins
14 days	Add remark on unused files	Pjotr Prins
14 days	Debugging finding files	Pjotr Prins
14 days	Print external commands to console	Pjotr Prins
14 days	Show ENV vars on startup [AI]	Pjotr Prins
14 days	Move dead code to old/server.py	Pjotr Prins
14 days	README: add info on env vars	Pjotr Prins
14 days	GENECUP_DATADIR configures sqlite DB location	Pjotr Prins