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Deep learning method for linking pubmed with custom ontology
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2026-04-06
Combine pubmed online search to a single query
Pjotr Prins
2026-04-06
Only 3 letter abbreviations
Pjotr Prins
2026-04-06
Add form feedback
Pjotr Prins
2026-04-06
Getting ontology results
Pjotr Prins
2026-04-06
Create template
Pjotr Prins
2026-04-06
Add aliases
Pjotr Prins
2026-04-06
Added a test that creates an ontology
Pjotr Prins
2026-04-05
1.9.1 release
Pjotr Prins
2026-04-05
Get rid of outdated error
Pjotr Prins
2026-04-05
Use template to show intermediate phase
Pjotr Prins
2026-04-05
Show page when calling GEMINI API
Pjotr Prins
2026-04-05
Some cleanup and make GEMINI API cache work
Pjotr Prins
2026-04-05
The Gemini call now retries up to 3 times with a backoff delay (2s, then 4s) ...
Pjotr Prins
2026-04-05
Also cache gemini results
Pjotr Prins
2026-04-05
Cache PMID search hits
Pjotr Prins
2026-04-05
Make it more DRY
Pjotr Prins
2026-04-05
Add hybrid search finds us more abstracts
Pjotr Prins
2026-04-05
Add hybrid search
Pjotr Prins
2026-04-05
Add local search test
Pjotr Prins
2026-04-05
Add a test for a network fetch
Pjotr Prins
2026-04-05
Added test for esearch
Pjotr Prins
2026-04-05
Settings now use edirect updated EDIRECT_LOCAL_ARCHIVE
Pjotr Prins
2026-04-05
Use the short fetch-pubmed -path /path/to/archive → xfetch -db pubmed repla...
Pjotr Prins
2026-04-05
Add test framework
Pjotr Prins
2026-04-05
Unpacking XML files as an alternative for fetch-pubmed works, but not complet...
Pjotr Prins
2026-04-05
Update (README)
Pjotr Prins
2026-04-05
Add examples using local fethch
Pjotr Prins
2026-04-05
Example (guix.scm) add load path
Pjotr Prins
2026-04-03
Patch (edirect) to avoid panic during indexing
Pjotr Prins
2026-04-03
Fix edirect (guix) with unzip
Pjotr Prins
2026-04-01
add (edirect) gzip
Pjotr Prins
2026-04-01
fix (edirect)
Pjotr Prins
2026-04-01
fix (edirect)
Pjotr Prins
2026-04-01
Path fixes (edirect) and renamed package to edirect-25
Pjotr Prins
2026-04-01
Still fixing edirect
Pjotr Prins
2026-04-01
Fix (edirect) pubmed.ini
Pjotr Prins
2026-04-01
Fixing edirect
Pjotr Prins
2026-04-01
Fix edirect error ERROR: No data supplied to stdin or file, mode: 'Dcrw--w-...
Pjotr Prins
2026-03-31
Added recent edirect tooling (guix.scm)
Pjotr Prins
2026-03-30
Add systemd example for fetching the archive
Pjotr Prins
2026-03-29
Update README
Pjotr Prins
2026-03-29
Add example search
Pjotr Prins
2026-03-29
Move API key into credentials file [AI]
Pjotr Prins
2026-03-29
Split pipe commands, so we can see how long they take
Pjotr Prins
2026-03-29
Show gemini error in result
Pjotr Prins
2026-03-29
Missing comma
Pjotr Prins
2026-03-29
Amend path again
Pjotr Prins
2026-03-29
All three Gemini API calls now print the response to the console
Pjotr Prins
2026-03-28
Fix search for PubMed/Archive
Pjotr Prins
2026-03-28
Revert on PubMed injection
Pjotr Prins
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