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| -rw-r--r-- | templates/index.html | 50 |
1 files changed, 35 insertions, 15 deletions
diff --git a/templates/index.html b/templates/index.html index f9a4fc1..2d71ef6 100644 --- a/templates/index.html +++ b/templates/index.html @@ -2,17 +2,24 @@ {% block content %} {{ message | safe }} -<h3> <u>R</u>elationship with <u>A</u>ddiction <u>T</u>hrough <u>S</u>earches of <u>Pub</u>Med </span></a> +<h3> <u>R</u>elationship with <u>A</u>ddiction <u>T</u>hrough <u>S</u>earches of <u>Pub</u>Med </span></a> </h3> <table> <tr><td > -<p> RatsPub searches PubMed to find <i>sentences</i> that contain the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">drug addiction-related keywords</a>. These gene-keyword relationships are presented as an interactive graph that can efficiently answer the question <b>"What do we know about these genes and addiction?". </b> Data from <a href="https://www.ebi.ac.uk/gwas/">EBI GWAS catalog </a>are also included in the search to better answer this question. +<p> RatsPub searches PubMed to find <i>sentences</i> that contain the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">drug addiction-related keywords</a>. These gene-keyword relationships are presented as an interactive graph that can efficiently answer the question <b>"What do we know about these genes and addiction?". </b> Data from <a href="https://www.ebi.ac.uk/gwas/">EBI GWAS catalog </a>are also included in the search. The graph has many interactive elements. For example, clicking gene names will launch a new search for sentences containing the target gene and 200 addiction-related genes. A tabular view is also available. </b> + + <p>Up to 100 gene symbols can be entered in the box below. Gene symbols can be separated by either a space or a semicolon. Aliases will <i>not</i> be automatically included because the large number of false matches associated with gene synonyms retrieved from databases. + + <b> {%if "name" in session %} + {{session['name']}}, your previous searches are <a href="/userarchive">archived </a> for faster retrival.</a> + {% else %} + Please sign in to save your searches. + {% endif %} + </b> -<p> The graph has many interactive elements. For example, clicking gene names will launch a new search for sentences containing the target gene and 200 addiction-related genes. These results help to answer the question <b>"Are there genes that can link my gene of interest to addiction?" </b> -<p>Up to 100 gene symbols can be searched at a time. Gene symbols can be separated by either a space or a semicolon. Gene alias will <i>not</i> be automatically included because the large number of false matches associated with gene synonyms retrieved from databases. </td> <td > <div class='img'><img src="/static/ratspub.png" class="img-fluid"> @@ -20,20 +27,33 @@ </tr> </table> - <p> - <b>Example</b>: Rgma Nrxn3 Chrna3 - -<br> - <form action="/progress"> + <a> + +<b> Example: </b>Rgma Nrxn3 Chrna3 <p> + + <form action="/progress"> + <div class="form-group row"> + <div class="col-sm-10"> + <strong>Please choose keyword categories to be included in the search:</strong> + <label> + <input type="checkbox" name="type" value="GWAS" checked> Human GWAS + <input type="checkbox" name="type" value="addiction" checked> Addiction Stage + <input type="checkbox" name="type" value="drug" checked> Drugs + <input type="checkbox" name="type" value="brain" checked> Brain region + <input type="checkbox" name="type" value="stress" checked> Stress + <input type="checkbox" name="type" value="psychiatric" checked> Psychiatric Diseases + <input type="checkbox" name="type" value="function" checked> Function + </label> + </div> + + <textarea name="query" class="form-control form-control-lg" type="search" row="3" id="searchform"> </textarea> - <div class="form-group row"> - <div class="col-sm-10"> - <button type="submit" class="btn btn-primary">Submit</button> - </div> - </div> + <button type="submit" class="btn btn-primary">Search</button> + </div> + </form> + - </form> {% endblock %} |