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-rw-r--r--templates/index.html50
1 files changed, 35 insertions, 15 deletions
diff --git a/templates/index.html b/templates/index.html
index f9a4fc1..2d71ef6 100644
--- a/templates/index.html
+++ b/templates/index.html
@@ -2,17 +2,24 @@
{% block content %}
{{ message | safe }}
-<h3> <u>R</u>elationship with <u>A</u>ddiction <u>T</u>hrough <u>S</u>earches of <u>Pub</u>Med </span></a>
+<h3> <u>R</u>elationship with <u>A</u>ddiction <u>T</u>hrough <u>S</u>earches of <u>Pub</u>Med </span></a>
</h3>
<table>
<tr><td >
-<p> RatsPub searches PubMed to find <i>sentences</i> that contain the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">drug addiction-related keywords</a>. These gene-keyword relationships are presented as an interactive graph that can efficiently answer the question <b>"What do we know about these genes and addiction?". </b> Data from <a href="https://www.ebi.ac.uk/gwas/">EBI GWAS catalog </a>are also included in the search to better answer this question.
+<p> RatsPub searches PubMed to find <i>sentences</i> that contain the query terms (i.e., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub_keywords.py">drug addiction-related keywords</a>. These gene-keyword relationships are presented as an interactive graph that can efficiently answer the question <b>"What do we know about these genes and addiction?". </b> Data from <a href="https://www.ebi.ac.uk/gwas/">EBI GWAS catalog </a>are also included in the search. The graph has many interactive elements. For example, clicking gene names will launch a new search for sentences containing the target gene and 200 addiction-related genes. A tabular view is also available. </b>
+
+ <p>Up to 100 gene symbols can be entered in the box below. Gene symbols can be separated by either a space or a semicolon. Aliases will <i>not</i> be automatically included because the large number of false matches associated with gene synonyms retrieved from databases.
+
+ <b> {%if "name" in session %}
+ {{session['name']}}, your previous searches are <a href="/userarchive">archived </a> for faster retrival.</a>
+ {% else %}
+ Please sign in to save your searches.
+ {% endif %}
+ </b>
-<p> The graph has many interactive elements. For example, clicking gene names will launch a new search for sentences containing the target gene and 200 addiction-related genes. These results help to answer the question <b>"Are there genes that can link my gene of interest to addiction?" </b>
-<p>Up to 100 gene symbols can be searched at a time. Gene symbols can be separated by either a space or a semicolon. Gene alias will <i>not</i> be automatically included because the large number of false matches associated with gene synonyms retrieved from databases.
</td>
<td >
<div class='img'><img src="/static/ratspub.png" class="img-fluid">
@@ -20,20 +27,33 @@
</tr>
</table>
- <p>
- <b>Example</b>: Rgma Nrxn3 Chrna3
-
-<br>
- <form action="/progress">
+ <a>
+
+<b> Example: </b>Rgma Nrxn3 Chrna3 <p>
+
+ <form action="/progress">
+ <div class="form-group row">
+ <div class="col-sm-10">
+ <strong>Please choose keyword categories to be included in the search:</strong>
+ <label>
+ <input type="checkbox" name="type" value="GWAS" checked> Human GWAS
+ <input type="checkbox" name="type" value="addiction" checked> Addiction Stage
+ <input type="checkbox" name="type" value="drug" checked> Drugs
+ <input type="checkbox" name="type" value="brain" checked> Brain region
+ <input type="checkbox" name="type" value="stress" checked> Stress
+ <input type="checkbox" name="type" value="psychiatric" checked> Psychiatric Diseases
+ <input type="checkbox" name="type" value="function" checked> Function
+ </label>
+ </div>
+
+
<textarea name="query" class="form-control form-control-lg" type="search" row="3" id="searchform">
</textarea>
- <div class="form-group row">
- <div class="col-sm-10">
- <button type="submit" class="btn btn-primary">Submit</button>
- </div>
- </div>
+ <button type="submit" class="btn btn-primary">Search</button>
+ </div>
+ </form>
+
- </form>
{% endblock %}