diff options
| -rwxr-xr-x | server.py | 3 | ||||
| -rw-r--r-- | static/style.css | 26 | ||||
| -rw-r--r-- | templates/index.html | 7 |
3 files changed, 32 insertions, 4 deletions
@@ -22,7 +22,8 @@ def search(): genes=genes.replace(";", " ") genes=genes.split() if len(genes)>=6: - return render_template('index.html') + message="<span class='text-danger'>Up to five terms can be searched at a time</span>" + return render_template('index.html', message=message) nodes=default_nodes edges=str() for gene in genes: diff --git a/static/style.css b/static/style.css new file mode 100644 index 0000000..509a2b7 --- /dev/null +++ b/static/style.css @@ -0,0 +1,26 @@ +#cy { + width: 80%; + height: 90%; + position: absolute; + left: 0px; +} + + +a:link { + color:grey ; +} + +/* A link that has been visited */ +a:visited { + color: grey; +} + +/* A link that is hovered on */ +a:hover { + color: blue; +} + +/* A link that is selected */ +a:active { + color: blue; +} diff --git a/templates/index.html b/templates/index.html index 011aa6f..6d50a63 100644 --- a/templates/index.html +++ b/templates/index.html @@ -1,16 +1,17 @@ {% extends "layout.html" %} {% block content %} <p> - +<br> +{{ message | safe }} <form action="/search"> <input name="query" class="form-control form-control-lg" type="search" placeholder="Rgma Nrxn3" aria-label="search" value=""> <button class="btn btn-outline-success my-2 my-sm-0" type="submit">Search</button> </form> <br> - This app searches PubMed to find <i>sentences</i> that contain the query terms (e.g., gene symbols, <b>up to five are allowed per search</b>) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub.py#L95-L129">keywords</a> related to drug addiction. + This app searches PubMed to find <i>sentences</i> that contain the query terms (e.g., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub.py#L95-L129">keywords</a> related to drug addiction. <p> <br> -Searches are conducted through PubMed to get relevant PMIDs, which are then used to retrieve the abstracts from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive</a>. The relationships are presented as an interactive <a href="https://js.cytoscape.org" >cytoscape</a> graph. The nodes can be moved around to better reveal the connections. Clicking on the links will bring up the corresponding sentences in a new browser window. +Searches are conducted through PubMed to get relevant PMIDs, which are then used to retrieve the abstracts from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive</a>. The gene-keyword relationships are presented as an interactive <a href="https://js.cytoscape.org" >cytoscape</a> graph. The nodes can be moved to better reveal the connections. Tap on the links will bring up the corresponding sentences in a new browser window. <p> <hr> <a href="https://github.com/chen42/ratspub"> Source code </a> |