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authorHao Chen2019-05-09 16:14:07 -0500
committerHao Chen2019-05-09 16:14:07 -0500
commit4bbf98ad0f530d76af6f67d5482277b81bfcb524 (patch)
tree1044dfd23676e89f9e08f922793d8839bb785a10
parent23e5c27d83d545fb1155ae9c0d558abe9c828c91 (diff)
downloadgenecup-4bbf98ad0f530d76af6f67d5482277b81bfcb524.tar.gz
warning message and style change
-rwxr-xr-xserver.py3
-rw-r--r--static/style.css26
-rw-r--r--templates/index.html7
3 files changed, 32 insertions, 4 deletions
diff --git a/server.py b/server.py
index 804e0fc..457a8cd 100755
--- a/server.py
+++ b/server.py
@@ -22,7 +22,8 @@ def search():
genes=genes.replace(";", " ")
genes=genes.split()
if len(genes)>=6:
- return render_template('index.html')
+ message="<span class='text-danger'>Up to five terms can be searched at a time</span>"
+ return render_template('index.html', message=message)
nodes=default_nodes
edges=str()
for gene in genes:
diff --git a/static/style.css b/static/style.css
new file mode 100644
index 0000000..509a2b7
--- /dev/null
+++ b/static/style.css
@@ -0,0 +1,26 @@
+#cy {
+ width: 80%;
+ height: 90%;
+ position: absolute;
+ left: 0px;
+}
+
+
+a:link {
+ color:grey ;
+}
+
+/* A link that has been visited */
+a:visited {
+ color: grey;
+}
+
+/* A link that is hovered on */
+a:hover {
+ color: blue;
+}
+
+/* A link that is selected */
+a:active {
+ color: blue;
+}
diff --git a/templates/index.html b/templates/index.html
index 011aa6f..6d50a63 100644
--- a/templates/index.html
+++ b/templates/index.html
@@ -1,16 +1,17 @@
{% extends "layout.html" %}
{% block content %}
<p>
-
+<br>
+{{ message | safe }}
<form action="/search">
<input name="query" class="form-control form-control-lg" type="search" placeholder="Rgma Nrxn3" aria-label="search" value="">
<button class="btn btn-outline-success my-2 my-sm-0" type="submit">Search</button>
</form>
<br>
- This app searches PubMed to find <i>sentences</i> that contain the query terms (e.g., gene symbols, <b>up to five are allowed per search</b>) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub.py#L95-L129">keywords</a> related to drug addiction.
+ This app searches PubMed to find <i>sentences</i> that contain the query terms (e.g., gene symbols) and <a href="https://github.com/chen42/RatsPub/blob/master/ratspub.py#L95-L129">keywords</a> related to drug addiction.
<p>
<br>
-Searches are conducted through PubMed to get relevant PMIDs, which are then used to retrieve the abstracts from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive</a>. The relationships are presented as an interactive <a href="https://js.cytoscape.org" >cytoscape</a> graph. The nodes can be moved around to better reveal the connections. Clicking on the links will bring up the corresponding sentences in a new browser window.
+Searches are conducted through PubMed to get relevant PMIDs, which are then used to retrieve the abstracts from a <a href="https://dataguide.nlm.nih.gov/edirect/archive.html">local archive</a>. The gene-keyword relationships are presented as an interactive <a href="https://js.cytoscape.org" >cytoscape</a> graph. The nodes can be moved to better reveal the connections. Tap on the links will bring up the corresponding sentences in a new browser window.
<p>
<hr>
<a href="https://github.com/chen42/ratspub"> Source code </a>