diff options
| author | Hao Chen | 2020-04-22 08:24:19 -0500 |
|---|---|---|
| committer | Hao Chen | 2020-04-22 08:24:19 -0500 |
| commit | 5acb78ce96b7f47f0827838a5cc58d0527953f74 (patch) | |
| tree | 8557ed9f7c1b26dd40667ecc8189143c48ad8123 /utility/topGene_step0_extract_gene_alias_from_gene_info.sh | |
| parent | 2f58b4d9989cd319cca86b24edcc6eaa45a49c7b (diff) | |
| parent | 4999cb684b2db9ddc16dbbbbf600df0ff947ae07 (diff) | |
| download | genecup-5acb78ce96b7f47f0827838a5cc58d0527953f74.tar.gz | |
Merge branch 'master' of https://github.com/chen42/atpub
Diffstat (limited to 'utility/topGene_step0_extract_gene_alias_from_gene_info.sh')
| -rwxr-xr-x | utility/topGene_step0_extract_gene_alias_from_gene_info.sh | 4 |
1 files changed, 4 insertions, 0 deletions
diff --git a/utility/topGene_step0_extract_gene_alias_from_gene_info.sh b/utility/topGene_step0_extract_gene_alias_from_gene_info.sh new file mode 100755 index 0000000..4d3118b --- /dev/null +++ b/utility/topGene_step0_extract_gene_alias_from_gene_info.sh @@ -0,0 +1,4 @@ +#!/bin/bash +#-e "s/\(|\)/ /g" -e "s/\[|\]/ /g" +grep ^9606 ~/Downloads/gene_info |cut -f 3,5,12|grep -v ^LOC|grep -v -i pseudogene |sed -e "s/\t-//" -e "s/\t/|/2" -e "s/\t-//" -e "s/\t/\|/" -e "s/(\|)\|\[\|\]\|{\|}/ /g" | sort >ncbi_gene_symb_syno_name_txid9606.txt + |