From 15dde5133ac6d72846aa0db631e6660d50cb904e Mon Sep 17 00:00:00 2001
From: Hao Chen
Date: Sun, 19 Apr 2020 12:02:28 -0500
Subject: mv some files to utility

---
 utility/topGene_step0_extract_gene_alias_from_gene_info.sh | 4 ++++
 1 file changed, 4 insertions(+)
 create mode 100755 utility/topGene_step0_extract_gene_alias_from_gene_info.sh

(limited to 'utility/topGene_step0_extract_gene_alias_from_gene_info.sh')

diff --git a/utility/topGene_step0_extract_gene_alias_from_gene_info.sh b/utility/topGene_step0_extract_gene_alias_from_gene_info.sh
new file mode 100755
index 0000000..4d3118b
--- /dev/null
+++ b/utility/topGene_step0_extract_gene_alias_from_gene_info.sh
@@ -0,0 +1,4 @@
+#!/bin/bash
+#-e "s/\(|\)/ /g"  -e "s/\[|\]/ /g" 
+grep ^9606 ~/Downloads/gene_info |cut -f 3,5,12|grep -v ^LOC|grep -v -i pseudogene |sed -e "s/\t-//"  -e "s/\t/|/2"  -e "s/\t-//"  -e "s/\t/\|/" -e "s/(\|)\|\[\|\]\|{\|}/ /g" | sort >ncbi_gene_symb_syno_name_txid9606.txt 
+
-- 
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